Jatropha Genome Database

JcCB0305141.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0305141.40 - phase: 2 /pseudo/partial
         (338 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30143.m001222 Rop guanine nucleotide exchange factor, putative        367   e-102
28934.m000056 Rop guanine nucleotide exchange factor, putative        233   9e-62
30174.m008604 Rop guanine nucleotide exchange factor, putative        118   4e-27
29683.m000479 Rop guanine nucleotide exchange factor, putative        113   1e-25
29827.m002639 Rop guanine nucleotide exchange factor, putative        102   3e-22
30170.m014310 Rop guanine nucleotide exchange factor, putative        101   5e-22
30146.m003571 conserved hypothetical protein                          100   1e-21
29912.m005502 hypothetical protein                                     87   9e-18

>30143.m001222 Rop guanine nucleotide exchange factor, putative
          Length = 590

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/272 (69%), Positives = 207/272 (76%), Gaps = 10/272 (3%)

Query: 76  KFLTHTWKHFQSLSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDL 135
           +F +     F  LSTE+VALD ANRVESAIYVWR+R HSKP  YPNRSTARSSW++VKD 
Sbjct: 320 QFSSECLLDFLDLSTEHVALDTANRVESAIYVWRRRAHSKPQVYPNRSTARSSWDMVKDF 379

Query: 136 MVDGDKXXXXXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLA 195
           MVDGDK               KQRFPSLSQTTLDTSKIQFNKDVGKSILESYSR+LESLA
Sbjct: 380 MVDGDKRELLAERAESLLLSLKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRILESLA 439

Query: 196 FNIVARIDDLLYVDDLTKHSDKLSVSSVSVIAHKKVSLPYSVPVSGTPYKXXXXXXXXXX 255
           FNIVARIDDLLYVDDLTKHSDKL VS+VSVIAHKKV++PYSVPVSGTPY+          
Sbjct: 440 FNIVARIDDLLYVDDLTKHSDKLQVSTVSVIAHKKVTIPYSVPVSGTPYR-TTFSTPSFS 498

Query: 256 XXXLISPARGERTPFLHN--ITMSNNNNKPHRRGFGVKRVLTNYLGGDTKAKICGNQTDG 313
              LISPARGERTPFL N     +NN+NKPHRRGFGVKRVLTNYLG D+K +ICGN T+G
Sbjct: 499 PAPLISPARGERTPFLPNAATAATNNSNKPHRRGFGVKRVLTNYLGVDSKPRICGNSTEG 558

Query: 314 LCPNSNANGTE-------TAILHQNAPKYTVT 338
            CPNSN  GTE       TA  +Q A KYTVT
Sbjct: 559 SCPNSNIGGTEGRGIDNGTAKPYQTALKYTVT 590


>28934.m000056 Rop guanine nucleotide exchange factor, putative
          Length = 673

 Score =  233 bits (594), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 125/219 (57%), Positives = 149/219 (68%), Gaps = 8/219 (3%)

Query: 76  KFLTHTWKHFQSLSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDL 135
           +FL         LS+E+ A+++ANRVE+A YVWRKR +SKP     RS +RSSWE+VK+L
Sbjct: 443 QFLPECLLDCLDLSSEHQAIELANRVEAATYVWRKRTNSKPANNTTRSGSRSSWELVKEL 502

Query: 136 MVDGDKXXXXXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLA 195
           M D DK               KQRFP L QTTLD SKIQ+NKDVGKSILESYSRVLESLA
Sbjct: 503 MTDADKRDLLADRAESLLLCLKQRFPGLPQTTLDMSKIQYNKDVGKSILESYSRVLESLA 562

Query: 196 FNIVARIDDLLYVDDLTKHSDKL-SVSSVSVIAHKKVSLPYSVPVSGTPYKXXXXXXXXX 254
           FNIVARIDDLLYVDDLTKHSD+  S+S VSVIAHK V++PYSVPV+ TPYK         
Sbjct: 563 FNIVARIDDLLYVDDLTKHSDQFSSISKVSVIAHKSVTIPYSVPVTSTPYK-TAYTTPSF 621

Query: 255 XXXXLISPARGERTPFLHNITMSNNNNKPHRRGFGVKRV 293
               LISP +G+R+P      +S +N    +RG GVK+ 
Sbjct: 622 SPGHLISPVKGDRSP------ISTSNKMSQQRGLGVKKC 654


>30174.m008604 Rop guanine nucleotide exchange factor, putative
          Length = 471

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 89/133 (66%), Gaps = 11/133 (8%)

Query: 88  LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVD---GDKXXX 144
           L++E+ AL++A+RVE+++Y WR++           S ++SSW +VK+ M D    DK   
Sbjct: 347 LASEHEALELADRVEASMYTWRRKA--------CMSHSKSSWGMVKEFMSDLDRTDKNHV 398

Query: 145 XXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDD 204
                       KQR+P LSQT+LDT KIQ+N+DVG++ILESYSRVLE LAFN+VA I+D
Sbjct: 399 LAERAESLLFCLKQRYPELSQTSLDTCKIQYNRDVGQAILESYSRVLEGLAFNLVAWIED 458

Query: 205 LLYVDDLTKHSDK 217
           +L+VD   ++ D+
Sbjct: 459 VLFVDKSVRNQDE 471


>29683.m000479 Rop guanine nucleotide exchange factor, putative
          Length = 580

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 6/128 (4%)

Query: 88  LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTAR-SSWE-IVKDLMVDGD-KXXX 144
           LSTE+  L+IANR+E+A++VW+++   K   + + + AR +SW   VK L+ D   K   
Sbjct: 348 LSTEHHTLEIANRIEAALHVWKQKDQRK---HTSHTKARHTSWGGKVKGLVADTKRKNTF 404

Query: 145 XXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDD 204
                       + RFP L QT LD  KIQ+NKDVG+SILESYSRV+ESLAFNI+ARIDD
Sbjct: 405 LAQRAETLLQSLRLRFPGLPQTALDMHKIQYNKDVGQSILESYSRVMESLAFNIMARIDD 464

Query: 205 LLYVDDLT 212
           ++YVDD T
Sbjct: 465 VIYVDDAT 472


>29827.m002639 Rop guanine nucleotide exchange factor, putative
          Length = 526

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 83/133 (62%), Gaps = 3/133 (2%)

Query: 88  LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXX 147
           L +E+ A+++ N++E+A++ W++++ ++      +S  R+SW  VKD M + DK      
Sbjct: 327 LKSEHSAIEVINKLEAALFAWKQKITAQ---ISGKSPVRTSWSFVKDPMSEFDKTESLLD 383

Query: 148 XXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLY 207
                    K R+P+L QT L+ +KIQ+ KDVG SILE+YSRVL +LAF+I+ RI D+L 
Sbjct: 384 RAEALLQQVKARYPNLPQTFLEATKIQYGKDVGHSILEAYSRVLGNLAFSILCRIGDILQ 443

Query: 208 VDDLTKHSDKLSV 220
            D  T  +  +S+
Sbjct: 444 EDASTNPNSPVSI 456


>30170.m014310 Rop guanine nucleotide exchange factor, putative
          Length = 523

 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 75/115 (65%), Gaps = 2/115 (1%)

Query: 101 VESAIYVWRKRVHSKPPTYPNRSTARSSWE-IVKDLMVDGDKXXXXXXXXXXXXXXXKQR 159
           +E+A ++WRKR + K      R+  +S+W   VK  + + ++               + R
Sbjct: 329 IEAAAHIWRKR-YLKGYKAQARAQRKSTWRGRVKGFVGEVERNKLLARRAETLLHSLRLR 387

Query: 160 FPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLYVDDLTKH 214
           FP+L QTTLD+ KIQ+NKDVG +I+ESYSRV+ESLA+NI+ARI DLLYVDD TK 
Sbjct: 388 FPALPQTTLDSYKIQYNKDVGHAIIESYSRVMESLAYNILARIGDLLYVDDATKQ 442


>30146.m003571 conserved hypothetical protein
          Length = 554

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 81/127 (63%), Gaps = 12/127 (9%)

Query: 88  LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXX 147
           LS+E+  LD+ NR+E++I +W++++        N+   +S W     L    +K      
Sbjct: 341 LSSEHKILDLKNRIEASIVIWKRKM--------NQKDGKSGWGSAVSL----EKRELFEE 388

Query: 148 XXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLY 207
                    KQRFP + Q++LD SKIQ+N+DVG++ILESYSR+LESLA+ +++RI+D+LY
Sbjct: 389 RAETILLILKQRFPGIPQSSLDISKIQYNRDVGQAILESYSRILESLAYTVMSRIEDVLY 448

Query: 208 VDDLTKH 214
            D +T++
Sbjct: 449 ADYVTRN 455


>29912.m005502 hypothetical protein
          Length = 186

 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 50/57 (87%)

Query: 157 KQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLYVDDLTK 213
           KQRFP L Q+ LD SKIQ+NKDVG++ILESYSR++ESLAF +++RI+D+LY D LT+
Sbjct: 34  KQRFPGLPQSALDISKIQYNKDVGQAILESYSRIIESLAFTVLSRIEDVLYADSLTQ 90