Jatropha Genome Database

JcCB0304081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0304081.10 + phase: 0 
         (135 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014482 Protein yrdA, putative                                  225   4e-60
30170.m014065 Protein yrdA, putative                                   64   2e-11
30170.m014066 Protein yrdA, putative                                   62   6e-11
38855.m000017 Phenylacetic acid degradation protein paaY, putative     47   2e-06

>30147.m014482 Protein yrdA, putative
          Length = 253

 Score =  225 bits (574), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 113/129 (87%), Positives = 115/129 (89%), Gaps = 5/129 (3%)

Query: 1   MATALARISRKALTSTISPQRHLLNRSFSAEAS-----TKSITPSPDRVKWDYRGQRQII 55
           MA AL+RIS+KALTSTISPQ H L R FSA  S     TKSITPS DRVKWDYRGQRQII
Sbjct: 1   MAAALSRISKKALTSTISPQCHFLKRGFSAAESLSSSPTKSITPSADRVKWDYRGQRQII 60

Query: 56  PLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQERCVV 115
           PLGQWLPKVAVDAYVAPNVVLAGQVTV DGASVWSGSVLRGDLNKITVGFCSNVQERCVV
Sbjct: 61  PLGQWLPKVAVDAYVAPNVVLAGQVTVWDGASVWSGSVLRGDLNKITVGFCSNVQERCVV 120

Query: 116 HAAWNSPTG 124
           HAAWNSPTG
Sbjct: 121 HAAWNSPTG 129


>30170.m014065 Protein yrdA, putative
          Length = 271

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 51  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQ 110
            R ++ +    P V  DA+VAP+  + G V V  GAS+W G VLRGD+N I+VG  +N+Q
Sbjct: 42  HRTLMNIFDKAPMVDKDAFVAPSASIIGDVQVGKGASIWYGCVLRGDVNSISVGAGTNIQ 101

Query: 111 ERCVVHAAWNSPTG 124
           +  +VH A ++ +G
Sbjct: 102 DNSLVHVAKSNLSG 115


>30170.m014066 Protein yrdA, putative
          Length = 271

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 6/88 (6%)

Query: 43  RVKWDYRGQRQI------IPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRG 96
           R++ +Y  Q Q+      + +    P V  DA+VAP+  + G V V  GAS+W G VLRG
Sbjct: 28  RLQGNYYFQEQLSRHRTLMNVFDKAPVVDKDAFVAPSASIIGDVQVGRGASIWYGCVLRG 87

Query: 97  DLNKITVGFCSNVQERCVVHAAWNSPTG 124
           D+N I++G  +N+Q+  +VH A ++ +G
Sbjct: 88  DVNSISIGSGTNIQDNTLVHVAKSNLSG 115


>38855.m000017 Phenylacetic acid degradation protein paaY, putative
          Length = 214

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 9/77 (11%)

Query: 46  WDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGF 105
           + Y+G++         P ++  +++  N V+ G VT+    S+W+  V+R D + I +G 
Sbjct: 4   YQYQGRQ---------PTISSSSFIFDNAVIIGDVTIGHNVSIWASVVIRADNDSIVIGD 54

Query: 106 CSNVQERCVVHAAWNSP 122
            SNVQE  V+H    +P
Sbjct: 55  GSNVQEASVLHVDPQNP 71