Jatropha Genome Database

JcCB0302981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0302981.20 + phase: 0 /partial
         (178 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29838.m001726 Poly(rC)-binding protein, putative                      144   2e-35

>29838.m001726 Poly(rC)-binding protein, putative
          Length = 698

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/194 (50%), Positives = 109/194 (56%), Gaps = 23/194 (11%)

Query: 1   MGSTFLSPPLKRTIHYSTITAGMPDPN-SINGTSNKRSKXXXXXXXXXXX-----GHVSF 54
           MGS FL PP KR I Y+   AGMPDPN + NG SNKR K                GHVSF
Sbjct: 1   MGSNFLYPPSKRPIQYNA--AGMPDPNPTANGLSNKRPKQPPANQNAAAPLPLPPGHVSF 58

Query: 55  RLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXXXXXXX 114
           RLLCHASR             QLQQ +GAKIRIEE+P ES DR                 
Sbjct: 59  RLLCHASRIGGIIGKSGTIIKQLQQQSGAKIRIEESPAESSDRVITVIAEGQIVSKVRVE 118

Query: 115 NDGSGRQEIDVSKAQEALVRVFERILTVAAESDGIG---VAGGVVSCRLLGEAKQVGSVI 171
           +     +E+DVS+AQE L+RVFERIL VAAESDGI      GGVVSCR+L  +KQ GSVI
Sbjct: 119 S-----EEVDVSRAQEGLIRVFERILEVAAESDGINVVAGGGGVVSCRMLAGSKQAGSVI 173

Query: 172 G-------KRREDC 178
           G       K R+DC
Sbjct: 174 GKGGKVVEKIRKDC 187