Jatropha Genome Database

JcCB0302351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0302351.10 - phase: 1 /partial
         (151 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m003913 Transcription factor BIM1, putative                     238   8e-64
30138.m003899 conserved hypothetical protein                           99   6e-22
29790.m000843 Transcription factor BIM1, putative                      79   1e-15

>30138.m003913 Transcription factor BIM1, putative
          Length = 567

 Score =  238 bits (607), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 121/151 (80%), Positives = 131/151 (86%)

Query: 1   QPNFFNSGRSGGIVNQLPPRMVSDAENIANQPQPQSHNTRLCTSDGAVAADKLKEQELSI 60
           QPNFFN GR+GG V QLPPR+VSD EN A+QP+ QS+ TR CT++GAVA DKLKEQ+LSI
Sbjct: 417 QPNFFNCGRNGGAVAQLPPRLVSDVENTASQPESQSNQTRSCTTEGAVAVDKLKEQQLSI 476

Query: 61  EGGTINISSVYSQGLLNTLTQALQSSGVDLSLASISVQIQLGKRANRRPILPTSIVKDNE 120
           EGGTINISSVYSQGLLNTLTQALQSSGVDLS ASISVQI LGKRANR+  +PTSI KDNE
Sbjct: 477 EGGTINISSVYSQGLLNTLTQALQSSGVDLSQASISVQIDLGKRANRQSNIPTSINKDNE 536

Query: 121 VPCSNQGTTRPRVSDGEESGQALKKLKTSKS 151
           VP  NQGT RPRVS GEES  ALKKLKTSKS
Sbjct: 537 VPSCNQGTIRPRVSSGEESDHALKKLKTSKS 567


>30138.m003899 conserved hypothetical protein
          Length = 348

 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 54  KEQELSIEGGTINISSVYSQGLLNTLTQALQSSGVDLSLASISVQIQLGKRANRRPILPT 113
           +++EL+IEGGTI+ISSVYSQGLLN LT++LQS+GVDLS A+ISVQI LGKRANR     T
Sbjct: 254 QQEELTIEGGTISISSVYSQGLLNNLTRSLQSAGVDLSDANISVQIDLGKRANRGLASGT 313

Query: 114 SIVKDNEVPCSNQGTTRPR-VSDGEESGQALKKLKT 148
           S  KD  +  +NQ     R VS GE+S QA K+LKT
Sbjct: 314 STTKDPPL-SNNQVAAHLRDVSSGEDSDQAQKRLKT 348


>29790.m000843 Transcription factor BIM1, putative
          Length = 311

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 86/153 (56%), Gaps = 3/153 (1%)

Query: 1   QPNFFNSGRSGGIVNQLPPRMVSDAENIANQPQPQSHNTRLCTSDGAVAADKLKEQELSI 60
           Q N F +   GGI  Q     VSDAEN+A Q Q Q    + C S+    ++ +  QE  +
Sbjct: 160 QMNTFAAVGRGGITAQSVQESVSDAENMAYQLQSQLWQGQPCASECTAPSNTVNGQEEQM 219

Query: 61  EGGTINISSVYSQGLLNTLTQALQSSGVDLSLASISVQIQLGKRANRRPILPTSIVKDNE 120
               + +SS +SQG+L+ LTQALQSSGVDLS  SISVQI + K+AN       S  KD E
Sbjct: 220 SKSGL-VSSTFSQGILDNLTQALQSSGVDLSQTSISVQIDVSKQANSGAAFAASSSKDQE 278

Query: 121 -VPCSNQGTTRPRV-SDGEESGQALKKLKTSKS 151
            +  ++Q   +    S  E+S QA K+L+T KS
Sbjct: 279 SLYLNSQMMEQTGFGSCMEDSDQARKRLRTQKS 311