Jatropha Genome Database

JcCB0301651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0301651.10 + phase: 0 /partial
         (212 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29900.m001593 conserved hypothetical protein                          251   2e-67
29900.m001592 conserved hypothetical protein                          168   2e-42

>29900.m001593 conserved hypothetical protein
          Length = 551

 Score =  251 bits (641), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/218 (63%), Positives = 155/218 (71%), Gaps = 8/218 (3%)

Query: 1   MQSPVRFSSCRGVAFEIKPHSNPFTLSP--VPEEPTXXXXXXXXX-XXXXXXKVFPSTTI 57
           MQSPVRFSSCRGVAFEIKPH +PF +S     +EP                 KVFPS+ +
Sbjct: 1   MQSPVRFSSCRGVAFEIKPHPDPFAISAPSNNDEPKGSNRFWLSWFQAGSSSKVFPSS-V 59

Query: 58  QRSVSRASSHFCXXXXXXXXXXXXXXX---XXXGKQEEIKEFTPNPLPSASKREQAPKPA 114
           QRSVSR SSHFC                     GK +E+ +    P PSASK EQ  K A
Sbjct: 60  QRSVSRGSSHFCDLDPEDDDKEEDDISFERLEEGKMDELVQ-KETPRPSASKSEQPAKAA 118

Query: 115 RKPESRLSVILLDQGLFTVYKRLFVVSLTLNITALVLAATSHFPYARNRAALFSIANILA 174
           RK ESRLSVILLDQGLFTVYKRLF++SLTLN+  L+LAAT +FPYARN+AALF+IANILA
Sbjct: 119 RKQESRLSVILLDQGLFTVYKRLFIISLTLNMLGLILAATGNFPYARNKAALFAIANILA 178

Query: 175 LTLCRSEAFLRVVFWLAVKVLGRSWIPLPIKTATTSLL 212
           LTLCRSEAFLRVVFWLAVKV GRSW+PLPIKTATTSLL
Sbjct: 179 LTLCRSEAFLRVVFWLAVKVFGRSWMPLPIKTATTSLL 216


>29900.m001592 conserved hypothetical protein
          Length = 562

 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 123/217 (56%), Gaps = 14/217 (6%)

Query: 8   SSCRGVAFEIKPHSNPFTLSP-----VPEEPTXXXXXXXXXXXXXXXKVF--PSTTIQRS 60
           +SCRGVAFE    S    L P     +P++                 + F   +  ++R+
Sbjct: 13  TSCRGVAFERT--SGELGLLPKAPPALPQDGQSGRWVWIPRSQKVFFQDFLLDNLVLERT 70

Query: 61  VSRASSHFCXXXXXXXXXXXXXXXXXXGKQEEIKEF---TPNPLPSASKREQAPKPARKP 117
           VSR+SSHFC                   K E   +      N      +  QAPKPA KP
Sbjct: 71  VSRSSSHFCDLDFTDEGAVKDHFQELMEKGEICHDDHLENQNIADIEKQMGQAPKPAAKP 130

Query: 118 E--SRLSVILLDQGLFTVYKRLFVVSLTLNITALVLAATSHFPYARNRAALFSIANILAL 175
              SRLS+ILLDQGLFTVYKRLF+V L LNI ALVLAA  HFPYA+  AALF+I NILAL
Sbjct: 131 RKPSRLSIILLDQGLFTVYKRLFMVCLILNIIALVLAAMGHFPYAKYNAALFAIGNILAL 190

Query: 176 TLCRSEAFLRVVFWLAVKVLGRSWIPLPIKTATTSLL 212
           +LCRSEAFLRVVF L VK+ GR W+PL  KTA TS L
Sbjct: 191 SLCRSEAFLRVVFLLVVKLFGRKWVPLHFKTAVTSFL 227