Jatropha Genome Database

JcCB0297821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0297821.10 - phase: 0 /partial
         (252 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004707 conserved hypothetical protein                          340   4e-94

>29929.m004707 conserved hypothetical protein
          Length = 483

 Score =  340 bits (872), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 182/255 (71%), Positives = 200/255 (78%), Gaps = 17/255 (6%)

Query: 1   MALNFSHRPLFPGILPEDNLVSPMRIANGYLVEGIPDKVDNCFDYGRDRGDRCG---SQD 57
           MALNFSHR LFPG LPEDNLV+PMR+ANGYLVE   DKV+NCFDYGRDR DRCG   SQ+
Sbjct: 1   MALNFSHRTLFPGHLPEDNLVTPMRLANGYLVE---DKVENCFDYGRDRSDRCGPCGSQE 57

Query: 58  SVHKDILDLLPSDPFGMDISTTFTAITGWLEDLEVDYGGYGRDQVATSGGNYQLFAGLNF 117
           SVHKDILDLLPSDPFGMDISTTFTA+TGWLEDLE+DY GY  DQVATS G+YQLFAGLNF
Sbjct: 58  SVHKDILDLLPSDPFGMDISTTFTALTGWLEDLEMDYTGYSSDQVATSDGSYQLFAGLNF 117

Query: 118 IWNNAMRFQTFPGNMGFDNSMNAFRELGNASAHDAGCLEEKEVGDASSHCALGLVCNVDD 177
           IW+NAMRFQ FPG+M FD   NA      A     GCL E E   AS  CA G+ CN+++
Sbjct: 118 IWSNAMRFQNFPGSMRFDCRSNA------AGGFCDGCL-ELEGTCASGPCAFGVTCNLEN 170

Query: 178 ILSLGNEIMGNGDTGAVDERCVEFHESSGVCSDGDGGAPHGAFGFALGYLGVRDLLVVET 237
           I SLGNE++GN D G + ER  E HE S   SDGD GAPH A GFAL +LGVRDLLVVET
Sbjct: 171 IFSLGNELVGNKDVGIM-ERSEESHEVS---SDGDVGAPHSALGFALAFLGVRDLLVVET 226

Query: 238 VCRSLRSTVRSDPLL 252
           VCRSLR TVR+DPLL
Sbjct: 227 VCRSLRWTVRNDPLL 241