Jatropha Genome Database

JcCB0297551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0297551.10 - phase: 0 /partial
         (52 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29631.m001021 nucleoredoxin, putative                                  62   7e-11
29631.m001022 nucleoredoxin, putative                                  50   2e-07

>29631.m001021 nucleoredoxin, putative
          Length = 553

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/29 (86%), Positives = 29/29 (100%)

Query: 24 FVIRSNGDQIRISSLVGKIVGLYFSGSWC 52
          F+IRSNGDQ++IS+LVGKIVGLYFSGSWC
Sbjct: 24 FLIRSNGDQVKISNLVGKIVGLYFSGSWC 52


>29631.m001022 nucleoredoxin, putative
          Length = 575

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 29/49 (59%)

Query: 4  ELVNGVXXXXXXXXXXXXXXFVIRSNGDQIRISSLVGKIVGLYFSGSWC 52
          E+VNG               ++IR+NGDQ+ I SL GK +GLYFS SWC
Sbjct: 3  EMVNGDYHDFVSLLSSSDRDYLIRNNGDQVEIDSLKGKKLGLYFSASWC 51