Jatropha Genome Database

JcCB0296601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0296601.10 + phase: 2 /pseudo/partial
         (171 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30063.m001411 Disease resistance protein RPS2, putative                81   2e-16
29222.m000399 leucine-rich repeat containing protein, putative         74   3e-14
29222.m000397 Disease resistance protein RGA2, putative                70   5e-13
29948.m000709 Disease resistance protein RGA2, putative                57   4e-09
29690.m000408 leucine-rich repeat containing protein, putative         51   3e-07
30131.m007209 Disease resistance protein RGA2, putative                47   5e-06

>30063.m001411 Disease resistance protein RPS2, putative
          Length = 1318

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 73/129 (56%)

Query: 40  LLEIYAVLDHAEEKQTTNPAVKIWLSKLQDLAYXXXXXXXXXXXXXSLSKLKARSQDIMG 99
           LL+I+AVLD AEEKQ TN  VKIWL++L+DLAY                 L   S+    
Sbjct: 66  LLKIHAVLDDAEEKQLTNQFVKIWLAELRDLAYDVEDILDEFATEAVHRGLIFESEANTS 125

Query: 100 AECNPTPSCTCLNPNVVLLNLKTRSKLKEITTRLKTIAKEKNDLDLRTNIGRRSNRMNER 159
                  +C  L  +  +  ++  SK+K ITTRL+ I+ +KN L+LR N+   S ++ +R
Sbjct: 126 KLLKLIHTCNGLISSNSVFRVRMISKMKGITTRLQAISNQKNYLNLRENLEGSSTKVRKR 185

Query: 160 VPTTSLMKE 168
           +PTTSL+ E
Sbjct: 186 LPTTSLVNE 194


>29222.m000399 leucine-rich repeat containing protein, putative
          Length = 788

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 17/135 (12%)

Query: 43  IYAVLDHAEEKQTTNPAVKIWLSKLQDLAYXXXXXXXXXXXXXSLSKLKARSQDIMGAEC 102
           IYA LD AEEKQ TN +VK+W+S+L+ LAY                  +AR + ++ AE 
Sbjct: 51  IYAFLDDAEEKQMTNQSVKVWVSELRHLAYDVEDILDEFDT-------EARRRRLL-AEA 102

Query: 103 NPTPS---------CTCLNPNVVLLNLKTRSKLKEITTRLKTIAKEKNDLDLRTNIGRRS 153
            P+ S         C  +NP  V  N +  S +++IT RL+ I KEK+ + L      R 
Sbjct: 103 TPSTSNLRKFIPACCVGMNPRTVKFNAEVISMMEKITVRLEDIIKEKDIMHLEEGTRGRI 162

Query: 154 NRMNERVPTTSLMKE 168
           +R+ ER  TT L+ E
Sbjct: 163 SRVRERSATTCLVNE 177


>29222.m000397 Disease resistance protein RGA2, putative
          Length = 1287

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 17/136 (12%)

Query: 42  EIYAVLDHAEEKQTTNPAVKIWLSKLQDLAYXXXXXXXXXXXXXSLSKLKARSQDIMGAE 101
           +IYA LD AEEKQ TN +VK+W+S+L+ LAY                  +AR + ++ AE
Sbjct: 50  KIYAFLDDAEEKQMTNQSVKVWVSELRHLAYDVEDILDEFDT-------EARRRRLL-AE 101

Query: 102 CNPTPS---------CTCLNPNVVLLNLKTRSKLKEITTRLKTIAKEKNDLDLRTNIGRR 152
             P+ S         C  + P  V  N +  S +++IT RL+ I +EK+ L L      R
Sbjct: 102 ATPSTSNLRKFIPACCVGMIPRTVKFNAEVISMMEKITIRLEDIIREKDVLHLEEGTRGR 161

Query: 153 SNRMNERVPTTSLMKE 168
            +R+ ER  TT L+ E
Sbjct: 162 ISRVRERSATTCLVNE 177


>29948.m000709 Disease resistance protein RGA2, putative
          Length = 1308

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 4/133 (3%)

Query: 39  TLLEIYAVLDHAEEKQTTNPAVKIWLSKLQDLAYXXXXXXXXXXXXXSLSKLKARSQDIM 98
           T++ + AVLD AEEKQ T PAVK WL +L+D AY               S+++A SQ  +
Sbjct: 47  TMISVNAVLDDAEEKQITKPAVKEWLDELKDAAYEADDLLDEIAYECLRSEVEATSQTDV 106

Query: 99  GAECNPTPSCTCLNPNVVLLNLKTRSKLKEITTRLKTIAKEKNDLDLRTNIGRRSNRMNE 158
               N   + +     V  + L+  SKL+EI  RL+ + K+K  L LR  I     R + 
Sbjct: 107 DQVRNFFSNFSPFK-KVKEVKLEEVSKLEEILERLELLVKQKEALGLREGI---EERHSH 162

Query: 159 RVPTTSLMKELLG 171
           ++PTTSL+ E +G
Sbjct: 163 KIPTTSLVDESVG 175


>29690.m000408 leucine-rich repeat containing protein, putative
          Length = 1174

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 13/124 (10%)

Query: 45  AVLDHAEEKQTTNPAVKIWLSKLQDLAYXXXXXXXXXXXXXSLSKLKARSQDIMGAECNP 104
            VLD AEE Q T  AVK WL +L+D  Y               SK+++RS    G +   
Sbjct: 53  GVLDDAEEMQITKLAVKKWLDELKDAFYDADDLLDEIAYKAFRSKMESRS----GID-KV 107

Query: 105 TPSCTCLNPNVVLLNLKTRSKLKEITTRLKTIAKEKNDLDLRTNIGRRSNRMNERVPTTS 164
               +  NP           +L EI  RL+ +  +K  L LR  IGRR      ++PTTS
Sbjct: 108 KSFVSSRNP----FKKGMEVRLNEILERLEDLVDKKGALGLRERIGRRPY----KIPTTS 159

Query: 165 LMKE 168
           ++ E
Sbjct: 160 VVDE 163


>30131.m007209 Disease resistance protein RGA2, putative
          Length = 635

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 26/37 (70%)

Query: 36 VNLTLLEIYAVLDHAEEKQTTNPAVKIWLSKLQDLAY 72
          VN T++ + AVL  AEEKQ TNPAVK WL  LQD  +
Sbjct: 24 VNTTIIHVNAVLYDAEEKQITNPAVKNWLDDLQDCVF 60