Jatropha Genome Database

JcCB0294291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0294291.10 - phase: 0 /partial
         (171 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006482 thump domain protein, putative                          154   1e-38

>30169.m006482 thump domain protein, putative
          Length = 382

 Score =  154 bits (390), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 113/171 (66%), Gaps = 4/171 (2%)

Query: 1   FYEELVHGKDTSVDLAELPNKPLNKKIKFVYSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           FYEELVH KDTSV L ELP KP +KKIKFVYS                            
Sbjct: 66  FYEELVHAKDTSVKL-ELPKKPSSKKIKFVYSDDEEDDDDNGVEGEEEEEDKEEDKEEGN 124

Query: 61  XXKSDVNQNSDAKSEVPTNEKLSFPNVENTCGANQREEKTKDSEDSGNDLENPTSEAKEP 120
             KSD  QN+D K++ P NEKL FPNV+ TC  NQ E+ T D+E  G D E+ T+E  EP
Sbjct: 125 --KSDTKQNNDDKNDNPANEKLEFPNVDKTCNGNQTEKNTCDNEAGGKD-EHQTNETDEP 181

Query: 121 PAKKQCLDTCVSKSTIHEKMEEKSVDKLIEDELKELGDKSKRRFANLDSGC 171
           PAKKQ ++TCVS S +HEK+E++S+DKLIEDELKELGDKSKRRF NLDSGC
Sbjct: 182 PAKKQIIETCVSSSVVHEKVEQRSIDKLIEDELKELGDKSKRRFTNLDSGC 232