Jatropha Genome Database

JcCB0294151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0294151.10 + phase: 0 /partial
         (230 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29869.m001185 hypothetical protein                                    295   1e-80
29869.m001184 transcription factor, putative                          268   1e-72
29631.m001025 hypothetical protein                                    134   3e-32
29869.m001190 hypothetical protein                                    130   4e-31

>29869.m001185 hypothetical protein
          Length = 593

 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/227 (66%), Positives = 177/227 (77%), Gaps = 9/227 (3%)

Query: 8   IERLRPLVGLKGWDYCVLWIFSDDQRFLEWMECCCGGTEDIK-NGGDEVQFPLSSSC-CR 65
           +ERLRPLVG KGWDYCVLWI SDDQR+LEWM+CCCGGTE+ + NGG+E+QFP+SS   CR
Sbjct: 1   MERLRPLVGFKGWDYCVLWILSDDQRYLEWMDCCCGGTENTQVNGGEELQFPVSSVLPCR 60

Query: 66  DLIFQHQRTKSCELLAQLPTSIPLDSGIHAQTLISNQPRWLNFSSCSDSSVLEGTVGTRA 125
           D+IFQH RTKSCELLA+L +S+PL+SGIHAQ LISN+PRW+NFS+ SD   L GTVGTRA
Sbjct: 61  DIIFQHPRTKSCELLARLSSSMPLESGIHAQALISNEPRWINFSNNSD---LNGTVGTRA 117

Query: 126 LIPVPGGLLELFVTKQVSEDQQLIDFVTSQCSIIREQEAIINSTNMEASFAXXXXXXSEQ 185
           LIPVPGGLLELFVTKQVSEDQ  IDFVT+QC+I+ EQEA+I+STN++  FA       E+
Sbjct: 118 LIPVPGGLLELFVTKQVSEDQHAIDFVTTQCTILMEQEAMISSTNIDTGFAVNMKMIGEE 177

Query: 186 QSSKPFLAVDQXXXXXXXPQINQFQLA--HQALEDLNNLAYDISGNR 230
           Q SK +LA             NQFQ A    ALE+L NL YDIS +R
Sbjct: 178 Q-SKAYLADHDNMEEKDHTNNNQFQQAPITPALENL-NLPYDISADR 222


>29869.m001184 transcription factor, putative
          Length = 576

 Score =  268 bits (685), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/171 (73%), Positives = 149/171 (87%), Gaps = 2/171 (1%)

Query: 8   IERLRPLVGLKGWDYCVLWIFSDDQRFLEWMECCCGGTEDIK-NGGDEVQFPLSSSC-CR 65
           +ERLRPLVG KGWDYC+LW  ++DQR+LEWM CCCGGT + + NGG+E+QFP+SS   CR
Sbjct: 1   MERLRPLVGSKGWDYCILWKLTEDQRYLEWMGCCCGGTGNTQANGGEELQFPVSSVLPCR 60

Query: 66  DLIFQHQRTKSCELLAQLPTSIPLDSGIHAQTLISNQPRWLNFSSCSDSSVLEGTVGTRA 125
           D+IFQH  +KSCELLAQLP+S+ LDSGIHAQ LISN+PRW+NFS+ SD SV+ GTVGTRA
Sbjct: 61  DIIFQHPTSKSCELLAQLPSSLSLDSGIHAQALISNEPRWINFSNNSDLSVVGGTVGTRA 120

Query: 126 LIPVPGGLLELFVTKQVSEDQQLIDFVTSQCSIIREQEAIINSTNMEASFA 176
           LIPVPGGLLELFVTKQVSEDQ +IDFVT+Q +I+ EQEA+INSTN+  SFA
Sbjct: 121 LIPVPGGLLELFVTKQVSEDQYVIDFVTTQYNILMEQEAMINSTNINTSFA 171


>29631.m001025 hypothetical protein
          Length = 472

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 110/173 (63%), Gaps = 11/173 (6%)

Query: 1   MNVFQSLIERLRPLVGLKGWDYCVLWIFSDD-QRFLEWMECCCGGTE---DIKNGGDEVQ 56
           M   +  +E LRP V  K WDY V+W   DD  R++EWM CCC G      ++ G D+  
Sbjct: 6   MKGLERALELLRPFVDSKAWDYSVVWKLGDDPSRYIEWMGCCCSGGGGKVKMERGEDK-- 63

Query: 57  FPLSSSCCRDLIFQHQ-RTKSCELLAQLPTSIPLDSGIHAQTLISNQPRWLNFSSCS-DS 114
              S S CRD+ F+H   TK+CE LA  P+S+PL SGIH + + S Q +W+  ++ S DS
Sbjct: 64  --YSVSLCRDVYFKHPISTKACEALAGYPSSMPLYSGIHGEMVTSTQSKWITHANASSDS 121

Query: 115 SVLEGTVGTRALIPVPGGLLELFVTKQVSEDQQLIDFVTSQCSIIREQEAIIN 167
           +     +GTR LIPV GGL+ELF  + +++DQ++ID+VT+  ++++ QEA+I+
Sbjct: 122 NSYPVPIGTRVLIPVFGGLIELFAARHIAKDQKIIDYVTAHFNVLK-QEAMIS 173


>29869.m001190 hypothetical protein
          Length = 88

 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 74/87 (85%), Gaps = 2/87 (2%)

Query: 8  IERLRPLVGLKGWDYCVLWIFSDDQRFLEWMECCCGGTEDIK-NGGDEVQFPLSSS-CCR 65
          +ERLRP VG KGWDYCV W  SDDQRF +WM+CCCGGTE+ + NGG+E+QFP+SS   CR
Sbjct: 1  MERLRPHVGFKGWDYCVPWKLSDDQRFPDWMDCCCGGTENTQVNGGEELQFPVSSVLTCR 60

Query: 66 DLIFQHQRTKSCELLAQLPTSIPLDSG 92
          D+IFQH RTK C+LLA+LP+S+PL+SG
Sbjct: 61 DIIFQHPRTKYCDLLARLPSSMPLESG 87