Jatropha Genome Database

JcCB0293391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0293391.10 - phase: 0 /partial
         (347 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29584.m000243 conserved hypothetical protein                          102   2e-22

>29584.m000243 conserved hypothetical protein
          Length = 578

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 94/163 (57%), Gaps = 21/163 (12%)

Query: 12  RKFSYGHLAQLKYLLHEAIQIDKILVHDKKTLCMKPEMEITLVFNEIE---GHHEQSDFI 68
           R+F +GHLAQ+KY+L EAI+I ++LV D+++ CMKP++ ++L  + IE       +S  +
Sbjct: 151 RRFDHGHLAQMKYILPEAIEITRVLVFDERSSCMKPDLHVSLNVDAIECDVNLKSESKNL 210

Query: 69  ALHQLFASRLTNYFTVHPEACDIPEAILPDPFNQSKRTAFGGEVSDIPEVKLPEPVSQSQ 128
            L ++F +RL +++  HPE  +IP+ +LP+PFN+SK     G     P   L    S  +
Sbjct: 211 HLRKVFRARLEDFYKAHPEGDEIPKELLPEPFNRSKLDLSSGTTK--PSTSL----SIIE 264

Query: 129 TFATEQLLANASTEDLPTTVESEPPSKSSHMHPSFSRHFSEKI 171
           T A  Q+             +S+ P  +SH   SF+R FS+K+
Sbjct: 265 TPAGTQM------------AKSQLPVAASHFSKSFTRRFSQKL 295