Jatropha Genome Database

JcCB0288881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0288881.10 - phase: 0 /partial
         (160 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29651.m000291 succinate dehydrogenase, putative                       133   3e-32

>29651.m000291 succinate dehydrogenase, putative
          Length = 622

 Score =  133 bits (335), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/67 (91%), Positives = 62/67 (92%)

Query: 93  GSCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQ 152
           GSCQGVIA+NMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQ
Sbjct: 206 GSCQGVIAMNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQ 265

Query: 153 ILSLFNF 159
            L    F
Sbjct: 266 DLEFVQF 272