Jatropha Genome Database

JcCB0288671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0288671.10 - phase: 0 /pseudo
         (255 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002014 replication factor C / DNA polymerase III gamma-ta...   282   1e-76
29648.m002000 replication factor C / DNA polymerase III gamma-ta...   144   4e-35
30190.m011152 replication factor C / DNA polymerase III gamma-ta...   142   1e-34
30072.m000942 replication factor C / DNA polymerase III gamma-ta...    70   1e-12
29634.m002116 replication factor C / DNA polymerase III gamma-ta...    51   6e-07

>29648.m002014 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 360

 Score =  282 bits (721), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 145/196 (73%), Positives = 149/196 (76%), Gaps = 7/196 (3%)

Query: 1   MNEKESFMDIDGDENEDQKQNDSYETNKGKNVVVAGTPPDIKAVPWVEKYRPQSLADVAA 60
           M +  + MDID D  E  KQN   + NKGKNV V     D KA PWVEKYRPQSLADVAA
Sbjct: 1   MADVVTIMDIDEDVKE--KQNQLSKPNKGKNVFV-----DTKATPWVEKYRPQSLADVAA 53

Query: 61  HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 120
           HRDIVDTIDRLT+ENRLPHLLLYGPPGTGKTSTILAVARKLYG QYHNMILELNASDDRG
Sbjct: 54  HRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGVQYHNMILELNASDDRG 113

Query: 121 IGVVRQQIXXXXXXXXXXXXXXXXXXXXXXXEADAMTKDAQFALRRVIEKYTKNTRFTLI 180
           I VVRQQI                       EADAMTKDAQFALRRVIEKYTKNTRF LI
Sbjct: 114 IDVVRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALI 173

Query: 181 CNHVNKIIPALQSRCT 196
           CNHVNKIIPALQSRCT
Sbjct: 174 CNHVNKIIPALQSRCT 189


>29648.m002000 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 342

 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 96/158 (60%), Gaps = 6/158 (3%)

Query: 45  PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 104
           PWVEKYRP+ + DVA   ++V  +      +  PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 105 Q-YHNMILELNASDDRGIGVVRQQIXXXXXXXXXXXXXXXX-----XXXXXXXEADAMTK 158
           + Y + +LELNASDDRGI VVR +I                            EAD+MT+
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIIILDEADSMTE 129

Query: 159 DAQFALRRVIEKYTKNTRFTLICNHVNKIIPALQSRCT 196
           DAQ ALRR +E Y+K TRF  +CN++++II  L SRC 
Sbjct: 130 DAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCA 167


>30190.m011152 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 333

 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 93/155 (60%), Gaps = 2/155 (1%)

Query: 44  VPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 103
           VPWVEKYRP  + D+  + D V  +  +  +  +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 15  VPWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 74

Query: 104 AQYHNMILELNASDDRGIGVVRQQIXXXXXXXXXXXXXXXXXXXXXXXEADAMTKDAQFA 163
             Y   +LELNASDDRGI VVR +I                       EAD+MT  AQ A
Sbjct: 75  PNYKEAVLELNASDDRGIDVVRNKI--KMFAQKKVTLPPGRHKVVILDEADSMTSGAQQA 132

Query: 164 LRRVIEKYTKNTRFTLICNHVNKIIPALQSRCTTV 198
           LRR +E Y+ +TRF L CN  +KII  +QSRC  V
Sbjct: 133 LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALV 167


>30072.m000942 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 342

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 43/67 (64%)

Query: 46  WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 105
           WV+KYRP++L  +  H DI   + +L +E   PHLL YGP G+GK + I+A+ R+++G  
Sbjct: 3   WVDKYRPKTLDQIMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGPS 62

Query: 106 YHNMILE 112
              + +E
Sbjct: 63  AEKVKVE 69


>29634.m002116 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 779

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 46  WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 105
           W +K++P SL+    H+     + +L   N +PH+LL GP G+GK S  +A+  +++G  
Sbjct: 433 WADKHQPSSLSGFICHKQEAQLLKQLVFHNNIPHILLKGPSGSGKRSLAMALLCEIFGGA 492

Query: 106 YHN 108
             N
Sbjct: 493 CRN 495