Jatropha Genome Database

JcCB0287791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0287791.10 + phase: 0 /pseudo/partial
         (310 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30054.m000829 conserved hypothetical protein                          162   2e-40

>30054.m000829 conserved hypothetical protein
          Length = 753

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/277 (40%), Positives = 146/277 (52%), Gaps = 70/277 (25%)

Query: 36  ENVDHCKDHGTTSDVVRTSTHFSMTTAVVEAQMNETGNDAEGVSAMISNGTGQSGPQICS 95
           E++DH K   + SDV +TS HFS  T V + ++N  GN AEG+SA I  G+G SGP++C 
Sbjct: 543 ESLDHHKSSVSISDVEKTSNHFSCVTVVEKDEINAIGNGAEGISAQILCGSGNSGPKLCY 602

Query: 96  DESRNDSDIPMNDVSASLGVVDWSNGTAKSEKLEETRTDIPMEASASLGARDWHNGLLKR 155
           + SR  +D+ M DVS S                                           
Sbjct: 603 ESSR--ADVSMTDVSVS------------------------------------------- 617

Query: 156 EKLEDIRVDGILHSEKLGALPPVKENNLCQVVHNIGRKDGLGPLTPPRSPV-DMNSGGLP 214
             LE      ILH EKLG           Q     GR D + PL PPRS   D+N GG+P
Sbjct: 618 --LEATNSHEILHDEKLG-----------QGAGTSGRND-VDPLMPPRSSSPDLNFGGVP 663

Query: 215 ETRHHIRRDHLKVENSRREHLENMENCKKLKRGVRDQRHEAIRYISKNVPSARGIRLMAA 274
             + HIRRDHLKVE         + + KK K+ +R+ R EA+RY+SKN+ ++R  +L+ A
Sbjct: 664 SAKKHIRRDHLKVER--------LIDFKKPKKAMRNHREEALRYVSKNMAASRRSKLIDA 715

Query: 275 MLPRNDKKRRLR--SSPCKQASPPSSRHKPNQRLAVL 309
           +LP+NDKKRRLR  SS CKQASPP +R K +QR AVL
Sbjct: 716 ILPQNDKKRRLRSSSSSCKQASPPGARSKISQRSAVL 752