Jatropha Genome Database

JcCB0287701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0287701.10 - phase: 0 /partial/short
         (41 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29844.m003306 conserved hypothetical protein                           64   1e-11

>29844.m003306 conserved hypothetical protein
          Length = 302

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 35/40 (87%)

Query: 1   PITFALVYMGTTLKDLSDVTHGWNEVSTTRWVRAVLPFVL 40
           PIT ALVY+GTTLKDLSDVTHGW++ STTRWV  VL FV+
Sbjct: 201 PITLALVYVGTTLKDLSDVTHGWSKFSTTRWVCIVLGFVV 240