Jatropha Genome Database

JcCB0285631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285631.20 - phase: 1 /pseudo/partial
         (90 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29999.m000207 RNA binding protein, putative                            62   5e-11

>29999.m000207 RNA binding protein, putative
          Length = 144

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 39/51 (76%), Gaps = 2/51 (3%)

Query: 42  RENMNAKYLDGWVIFVDPAK--PREQRPPPSPVQEPTDTGYRTNKTIGWCG 90
           RE MNAK+LDGWVIFVDPAK   +   PPP P  E ++TGY+ N+TIGWCG
Sbjct: 94  REGMNAKFLDGWVIFVDPAKPREQRLPPPPPPQPETSETGYKINRTIGWCG 144