Jatropha Genome Database

JcCB0285121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285121.10 + phase: 1 /pseudo/partial
         (241 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006437 GTP-binding protein enga, putative                      401   e-112
30063.m001416 GTP-binding protein enga, putative                      102   2e-22
28119.m000039 GTP-binding protein enga, putative                      100   7e-22
29908.m005988 gtpase mss1/trme, putative                               81   4e-16
34306.m000015 gtpase mss1/trme, putative                               72   2e-13
29634.m002103 GTP-binding protein era, putative                        53   1e-07

>30169.m006437 GTP-binding protein enga, putative
          Length = 624

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/224 (92%), Positives = 216/224 (96%)

Query: 18  EEENYIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLI 77
           EE+NY+PAIAIVGRPNVGKSSILNAL+ EDRTIVSPISGTTRDAIDTEFSGPDGQKFRLI
Sbjct: 344 EEQNYVPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFSGPDGQKFRLI 403

Query: 78  DTAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKE 137
           DTAGIRRRAAVASSGS+TEALSVNRAFRAIRRSDVVALVIEAMACITEQD+RIA+RIEKE
Sbjct: 404 DTAGIRRRAAVASSGSLTEALSVNRAFRAIRRSDVVALVIEAMACITEQDFRIADRIEKE 463

Query: 138 GKGCLIVVNKWDTIPNKNQQTAMYYEQDVREKLRTLHWAPVVYSTAIAGRSVEKIIDAAS 197
           GKGCLIVVNKWDTIPNKNQQTA YYEQDVREKLR L WAP+VYSTAIA  SVEKII AAS
Sbjct: 464 GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRILQWAPIVYSTAIADHSVEKIIIAAS 523

Query: 198 AVEKERSRRLSTAILNQVVGEALAFKSPPRTRGGKRGRIYYCTQ 241
           AVEKERSRRLSTAILNQVV EALAFKSPPRTRGG+RGR+YYCTQ
Sbjct: 524 AVEKERSRRLSTAILNQVVREALAFKSPPRTRGGRRGRVYYCTQ 567



 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 109/259 (42%), Gaps = 69/259 (26%)

Query: 20  ENYIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAI-DTEFSGPDGQKFRLID 78
           +N +P +AIVGRPNVGKS++ N L+  ++ IV    G TRD +    F G    +F ++D
Sbjct: 137 DNLLPRVAIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRSFWG--DFEFMVVD 194

Query: 79  TAGI----------------------------RRRAAVASSGSVTEALSVNRAFRAIRRS 110
           T G+                             R AAVA   S+ E     +A  A+  S
Sbjct: 195 TGGVLTISQSQDNVMEDLAITTTIGMDGIPLASREAAVARMPSMIE----RQAAAAVEES 250

Query: 111 DVVALVIEAMACITEQDYRIAERIEKE--GKGCLIVVNKWDTIPNKNQQTAMYYEQDVRE 168
            V+  +++  A +   D  IA+ + K    K  ++ VNK ++      Q A ++      
Sbjct: 251 SVIIFLVDGQAGLIAADIEIADWLRKNYSNKFIILAVNKCESPKKGIMQAAEFW------ 304

Query: 169 KLRTLHWAPVVYSTAIAGRSVEKIID--AASAVEKERSRRLS------------------ 208
              +L  +P+  S A++G    +++D   +   + E S+ L                   
Sbjct: 305 ---SLGLSPIPIS-ALSGTGTGELLDLVCSQLAKVEVSKHLDNEEQNYVPAIAIVGRPNV 360

Query: 209 --TAILNQVVGEALAFKSP 225
             ++ILN +VGE     SP
Sbjct: 361 GKSSILNALVGEDRTIVSP 379


>30063.m001416 GTP-binding protein enga, putative
          Length = 635

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 123/221 (55%), Gaps = 20/221 (9%)

Query: 18  EEENYIPA-IAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRL 76
           EE++ +P  +AIVGRPNVGKS++LN LL+E+R +V P  G TRD+I ++F    G+   L
Sbjct: 327 EEDSKLPMQLAIVGRPNVGKSTLLNTLLQEERVLVGPEVGLTRDSIRSQFDF-QGRTIYL 385

Query: 77  IDTAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMA------CITEQDYRI 130
           +DTAG   R       S   +LS+ ++ + + R+ VVALV++A         +T  +  I
Sbjct: 386 VDTAGWLHRTGQEKGPS---SLSIVQSRKNLMRAHVVALVLDAAEIAKARRSMTHAEVVI 442

Query: 131 AERIEKEGKGCLIVVNKWDTIPNKNQQTAMYYEQ-------DVREKLRTLHWAPVVYSTA 183
           A R  +EG+G +++VNK D +  K  Q +  +E+       +++  +  +   PVV+ +A
Sbjct: 443 ARRAVEEGRGLVVIVNKMDLLQGK--QNSKLFEKVMEAVPLEIQTVIPQVSGIPVVFISA 500

Query: 184 IAGRSVEKIIDAASAVEKERSRRLSTAILNQVVGEALAFKS 224
           + GR    ++       ++   RL TA LN+ + + ++  S
Sbjct: 501 LEGRGRTAVLRQVIGTYEKWCSRLPTARLNRWLHKVMSRHS 541



 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 19  EENYIPAIAIVGRPNVGKSSILNALLREDRTIV--SPISGTTRDAIDTEFSGPDGQKFRL 76
           + N +P + I+GRPNVGKS++ N L+R    +V  +P    TRD I    +     +FR+
Sbjct: 122 DSNLLPTVIIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRD-IREGLAKLGDLRFRV 180

Query: 77  IDTAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEK 136
           +D+AG+   A   S    T +++ N     + R+     +I+  A +   D  + + + K
Sbjct: 181 LDSAGLETEATSGSILQRTTSMTAN----VLARTQFAIFLIDVRAGLHPLDVEVGKWLRK 236

Query: 137 EGKGC--LIVVNKWDTI 151
              G   ++ +NK +++
Sbjct: 237 HAPGINPIVAMNKSESL 253


>28119.m000039 GTP-binding protein enga, putative
          Length = 236

 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 102/188 (54%), Gaps = 8/188 (4%)

Query: 54  ISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVV 113
           + GTTRD+I  +F   DG+++ L+DTAG+RRR  V  +    E  SV +  +AI  ++VV
Sbjct: 1   MPGTTRDSIHIDFER-DGKQYTLVDTAGVRRRGKVFEA---IEKFSVIKTLQAIEDANVV 56

Query: 114 ALVIEAMACITEQDYRIAERIEKEGKGCLIVVNKWDTIPNKNQQTAMYYEQDVREKLRTL 173
            LV++A   ITEQD  +A  + + G+  ++ +NKWD +  + +      ++D+  KL  L
Sbjct: 57  VLVLDAQDTITEQDGSLAAFVLETGRALVVAINKWDGLKEEQRDQV---KKDIDRKLHFL 113

Query: 174 HWAPVVYSTAIAGRSVEKIIDAASAVEKERSRRLSTAILNQVVGEALAFKSPPRTRGGKR 233
            +A   Y +A+ G+ +  ++ +  A       +LST  L +V+  A+    PP   G  R
Sbjct: 114 TYAKFHYLSALKGQGLPPLMKSVDAAYAAAMSKLSTPKLTRVLEAAVQQHQPP-VSGAVR 172

Query: 234 GRIYYCTQ 241
            ++ Y  Q
Sbjct: 173 PKLRYAHQ 180


>29908.m005988 gtpase mss1/trme, putative
          Length = 557

 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 22/180 (12%)

Query: 26  IAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 85
           IA+VGRPNVGKSS+LNA  + +R IV+ I+GTTRD ++   +   G    L+DTAGIR  
Sbjct: 313 IALVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEAGVT-VGGIPVTLLDTAGIRE- 370

Query: 86  AAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEGKG----- 140
                +  + E + V R+      +DV+ L I A    T +D  +  RIE   K      
Sbjct: 371 -----TDDIVEKIGVERSEAVAMGADVIILTISAFDGWTSEDSELLSRIESNKKSVGSST 425

Query: 141 -CLIVVNKWDTIPNKNQQTAMYYEQDVREKLRTLHWAPVVYSTAIAGRSVEKIIDAASAV 199
             ++ +NK DT P+ + +    Y +   +          V++ A+ G+ ++++  A S +
Sbjct: 426 PVVLAINKIDTAPSLSMEWIGRYSKAFSKH---------VFTCAVTGQGIKELEMAISEI 476


>34306.m000015 gtpase mss1/trme, putative
          Length = 416

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 8/124 (6%)

Query: 26  IAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 85
           + ++G+PNVGKSS+LNAL  E+  IV+PI+GTTRD I +     +G    +IDTAG+R  
Sbjct: 224 VVLIGQPNVGKSSLLNALSGEEVAIVTPIAGTTRDTIKSVIQ-IEGVPLHVIDTAGLRE- 281

Query: 86  AAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEGKGCLIVV 145
                +    E + + R ++AI  + V  L++++   I  Q+  I  ++  E K    V 
Sbjct: 282 -----TEDTVEQVGIARTWKAIETAHVALLLVDSQHGIGAQEKAILHKLPPEVKKVW-VH 335

Query: 146 NKWD 149
           NK D
Sbjct: 336 NKID 339


>29634.m002103 GTP-binding protein era, putative
          Length = 443

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 20/174 (11%)

Query: 26  IAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 85
           +A+VG+PNVGKS++ N ++ +  +IV+    TTR  I    SGPD Q   L DT G+   
Sbjct: 148 VAVVGKPNVGKSTLSNQMIGQKLSIVTDKPQTTRHRILGICSGPDYQ-MVLYDTPGV--- 203

Query: 86  AAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIE--KEGKGCLI 143
             +       +++ +     A   +D V ++++A     + D  + E +   K+    L+
Sbjct: 204 --IQKQMHKLDSMMMKNVRNAAINADCVLVIVDACKVPEKIDEVLEEGVGSLKDKPPILL 261

Query: 144 VVNKWDTI-PNKNQQTAMYYEQ--DVREKLRTLHWAPVVYSTAIAGRSVEKIID 194
           V+NK D I P +  +   +YE+  DV E         V+  +A  G  VE I D
Sbjct: 262 VLNKKDLIKPGEIAKKLEWYEKFTDVDE---------VIPVSAKYGHGVEDIKD 306