Jatropha Genome Database
- JcCB0284451.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0284451.20 - phase: 0 /partial
(80 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30072.m000968 hypothetical protein 89 6e-19
30128.m008661 hypothetical protein 71 9e-14
30131.m007023 double-stranded RNA binding protein, putative 69 5e-13
27538.m000333 double-stranded RNA binding protein, putative 67 2e-12
28609.m000208 double-stranded RNA binding protein, putative 61 1e-10
29908.m006275 conserved hypothetical protein 58 8e-10
29908.m006272 conserved hypothetical protein 55 6e-09
29854.m001106 conserved hypothetical protein 50 2e-07
30072.m000969 double-stranded RNA binding protein, putative 50 2e-07
>30072.m000968 hypothetical protein
Length = 162
Score = 88.6 bits (218), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 56/70 (80%)
Query: 1 MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
MYKTKLQELCHQK W+LP Y TTK G DH+P F TV VNG SF S SP +SSK AQN+A
Sbjct: 1 MYKTKLQELCHQKTWSLPEYSTTKVGQDHNPIFHATVIVNGYSFSSSSPSKSSKLAQNNA 60
Query: 61 AKVAFDHFST 70
AK+AFDHFS+
Sbjct: 61 AKLAFDHFSS 70
>30128.m008661 hypothetical protein
Length = 568
Score = 71.2 bits (173), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%)
Query: 1 MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
MYK +LQEL + +NLPSY +EGPDH PRF+ TV NG +F S + + + A++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAA 60
Query: 61 AKVAFDHFSTGG 72
A+VA + ++ G
Sbjct: 61 AEVALNTLASRG 72
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1 MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
+YK LQE H+ LP Y T + GP H P F TV + G+SF + P R+ K AQ +A
Sbjct: 87 VYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFSCTVELAGMSFTGE-PARTKKQAQKNA 145
Query: 61 AKVAFDHF 68
A A+
Sbjct: 146 AMAAWSAL 153
>30131.m007023 double-stranded RNA binding protein, putative
Length = 477
Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 1 MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
M+K +LQEL + +NLPSY +EGPDH PRF+ +V NG F S S + + A++ A
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 61 AKVAFDHFSTGG 72
A+VA + S+ G
Sbjct: 64 AEVALNVLSSRG 75
Score = 52.4 bits (124), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 1 MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
+YK LQE H+ NLP Y T + GP H P F TV + G++F + P ++ K A+ +A
Sbjct: 90 IYKNLLQETAHRAGLNLPVYTTIRSGPGHVPTFTCTVELAGMNFTGE-PAKTKKQAEKNA 148
Query: 61 AKVAFDHF 68
A A+
Sbjct: 149 AIAAWSAL 156
>27538.m000333 double-stranded RNA binding protein, putative
Length = 464
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%)
Query: 1 MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
MYK +LQEL + +NLPSY +EGPDH PRF+ TV NG F + + A++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSA 60
Query: 61 AKVAFDHFSTGG 72
A+VA S G
Sbjct: 61 AEVALTSLSNRG 72
>28609.m000208 double-stranded RNA binding protein, putative
Length = 289
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%)
Query: 1 MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
MYK +LQE ++ LP Y T EG HDP+FR TV V+G + S + F K A+ D
Sbjct: 13 MYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDV 72
Query: 61 AKVAF 65
AK+A
Sbjct: 73 AKLAL 77
>29908.m006275 conserved hypothetical protein
Length = 361
Score = 58.2 bits (139), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 1 MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
++K++LQE +K P Y+T KEGP H+P FR TV VN + + S F + K A+ A
Sbjct: 16 VFKSRLQEYAQKKGLPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNRKAAEQSA 75
Query: 61 AKVAF 65
A+VA
Sbjct: 76 AEVAL 80
>29908.m006272 conserved hypothetical protein
Length = 412
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 1 MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
++K +LQE +K P Y+T KEGP H+P FR TV VN + + S F + K A+ A
Sbjct: 15 VFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSA 74
Query: 61 AKVAF 65
+VA
Sbjct: 75 VEVAL 79
>29854.m001106 conserved hypothetical protein
Length = 284
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 28/39 (71%)
Query: 24 KEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDAAK 62
K+GPDH P F+ V VNGLSF S P SSK +QN+AAK
Sbjct: 2 KDGPDHTPSFKSNVIVNGLSFDSHFPSSSSKLSQNEAAK 40
>30072.m000969 double-stranded RNA binding protein, putative
Length = 280
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 YKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDAA 61
YK LQEL ++ + LPSY T G H P F TV V G F Q R+ K A+ +AA
Sbjct: 7 YKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQ-TRTKKQAEFNAA 65
Query: 62 KVAFDHF 68
KVA+
Sbjct: 66 KVAYKAL 72