Jatropha Genome Database

JcCB0284451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284451.10 + phase: 2 /pseudo/partial
         (149 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29932.m000609 cationic amino acid transporter, putative                62   8e-11
29932.m000608 cationic amino acid transporter, putative                60   3e-10
30075.m001193 cationic amino acid transporter, putative                58   2e-09
29994.m000450 cationic amino acid transporter, putative                48   2e-06
30155.m001635 cationic amino acid transporter, putative                46   6e-06

>29932.m000609 cationic amino acid transporter, putative
          Length = 462

 Score = 62.4 bits (150), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 32/48 (66%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P  SI++NIFLLGSID  SF RFG+WT          GLHA+YD A
Sbjct: 370 WLPSVSILINIFLLGSIDGASFGRFGVWTGILLIYYLLFGLHASYDTA 417


>29932.m000608 cationic amino acid transporter, putative
          Length = 587

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 31/48 (64%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P AS+ +NIFLLGSID  SF RF IWT          GLHA+YD A
Sbjct: 521 WLPSASVFINIFLLGSIDRDSFVRFAIWTGILLIYYFLFGLHASYDTA 568


>30075.m001193 cationic amino acid transporter, putative
          Length = 535

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P ASI +N+F++GSID  SF RF IWT           LHA+YDAA
Sbjct: 458 WLPSASIAVNVFIMGSIDGASFIRFSIWTVLLLFYYLFVALHASYDAA 505


>29994.m000450 cationic amino acid transporter, putative
          Length = 393

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 7   KSDEVDTMHFGNSWLFYCNCCY-------MGCRWRWMDWLCYYYTHMVIGYXXXXXXXXX 59
           K D         S+L   +CC        +G   +W+ W+C+  + +V            
Sbjct: 252 KRDNATNKPLEVSFLPADHCCIIHGDFSILGTETKWVVWICHICSLLVPADYRDTHDSPQ 311

Query: 60  XXXXXIMGCSISAMWIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYD 119
                + G  +  + +P  SI  NIFL+GS+  ++F RFGI T          GLHATYD
Sbjct: 312 QRTPKVWGFPLVPL-LPSWSIATNIFLMGSLSKQAFIRFGICTAIMLLYYVFFGLHATYD 370

Query: 120 AA 121
            A
Sbjct: 371 MA 372


>30155.m001635 cationic amino acid transporter, putative
          Length = 576

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDA 120
           WIP  SI LNIFLLGS+D  S+ RF  ++           +HA++DA
Sbjct: 502 WIPCVSIFLNIFLLGSLDGPSYLRFAFFSGLAVLVYVLYSVHASFDA 548