Jatropha Genome Database

JcCB0283991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0283991.10 + phase: 0 /pseudo/partial
         (275 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010873 eukaryotic translation initiation factor 3 subunit...   422   e-119

>30190.m010873 eukaryotic translation initiation factor 3 subunit,
           putative
          Length = 574

 Score =  422 bits (1085), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/244 (84%), Positives = 213/244 (87%)

Query: 32  NFSQQVLIRDGNKVAFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVVEVN 91
           NFSQQVLIRDGNKV+FDEPNPFA EGEEVASVAYRYRRWKLDDDM+LVARCEVQSVVEVN
Sbjct: 331 NFSQQVLIRDGNKVSFDEPNPFATEGEEVASVAYRYRRWKLDDDMHLVARCEVQSVVEVN 390

Query: 92  KQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLARWTAQALLASADL 151
           KQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLA+WTAQALLASADL
Sbjct: 391 KQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADL 450

Query: 152 MKLGFVSRVHPRDHYNHVILAVLGYKPRDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKY 211
           MKLG+VSRVHPRDHYNHVILAV+GYKPRDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKY
Sbjct: 451 MKLGYVSRVHPRDHYNHVILAVVGYKPRDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKY 510

Query: 212 VLVKDPSKPQVRIYEVPADAFENDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEDKNI 271
           VLVKDPSKPQVRIYEVPADAFENDY                            DVE K+I
Sbjct: 511 VLVKDPSKPQVRIYEVPADAFENDYVEEPLPEEEQVQPPGEDTENAEANGGTVDVEAKDI 570

Query: 272 SAQA 275
            AQA
Sbjct: 571 DAQA 574