Jatropha Genome Database

JcCB0281811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0281811.20 + phase: 0 
         (118 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27395.m000082 hydrogen-transporting ATP synthase, rotational mec...   189   3e-49
29794.m003340 hydrogen-transporting ATP synthase, rotational mec...   173   2e-44
29912.m005404 hydrogen-transporting ATP synthase, rotational mec...   166   3e-42

>27395.m000082 hydrogen-transporting ATP synthase, rotational
           mechanism, putative
          Length = 118

 Score =  189 bits (479), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 103/118 (87%)

Query: 1   MASKLPQLQSKLHSAAKHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLASIPN 60
           MASKLPQLQ K  S AK+G AFYKQLLE+NK ++Q+PPTV+RCQLL+NQLL+TRLASIP+
Sbjct: 1   MASKLPQLQGKASSVAKNGLAFYKQLLEQNKHFVQDPPTVKRCQLLSNQLLYTRLASIPS 60

Query: 61  RYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGYYV 118
           R EAFWKE+  LKNLMK K E N E AGL+ALFG+ECFAWF+GGEIIGRGFT TGY+V
Sbjct: 61  RCEAFWKEVGSLKNLMKDKQEFNKENAGLIALFGLECFAWFYGGEIIGRGFTHTGYHV 118


>29794.m003340 hydrogen-transporting ATP synthase, rotational
           mechanism, putative
          Length = 122

 Score =  173 bits (438), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 99/122 (81%), Gaps = 4/122 (3%)

Query: 1   MASKLPQLQSKLHSA----AKHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
           MASKL QLQSK   A    AKHGCA++KQLLE+NKQYIQ PPTVE+C LL+ QL +TRL 
Sbjct: 1   MASKLAQLQSKATQASQFVAKHGCAYFKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLE 60

Query: 57  SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
           SIP RYEAFWKEL+ +K+L K++ ++ +E AG+  +FG+ECFAWF  GEI+GRGFTFTGY
Sbjct: 61  SIPGRYEAFWKELDYVKHLWKNRTDLKVEDAGIATMFGLECFAWFCAGEIVGRGFTFTGY 120

Query: 117 YV 118
           +V
Sbjct: 121 HV 122


>29912.m005404 hydrogen-transporting ATP synthase, rotational
           mechanism, putative
          Length = 122

 Score =  166 bits (419), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 97/121 (80%), Gaps = 4/121 (3%)

Query: 1   MASKLPQLQSKLHSA----AKHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
           MASKL QLQSK   A    AKHG A+YKQLLE+NKQYIQ P TVE+C  L+ QL +TRLA
Sbjct: 1   MASKLHQLQSKACQASQFVAKHGTAYYKQLLEQNKQYIQQPATVEKCNELSKQLFYTRLA 60

Query: 57  SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
           SIP+R E+FWKEL+ +KNL K++ E+ +E AG+ ALFG+ECFAW+  GEI+GRGFTFTGY
Sbjct: 61  SIPHRNESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGY 120

Query: 117 Y 117
           Y
Sbjct: 121 Y 121