Jatropha Genome Database

JcCB0281811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0281811.10 - phase: 0 /partial
         (287 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010873 eukaryotic translation initiation factor 3 subunit...   371   e-103

>30190.m010873 eukaryotic translation initiation factor 3 subunit,
           putative
          Length = 574

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/287 (68%), Positives = 203/287 (70%), Gaps = 4/287 (1%)

Query: 4   GFEVGAVPFNPDGWGPPDAXXXXXXXX---LPLHVPFAPFSRSEKLGRIADWTXXXXXXX 60
           GFEVG VPFNPDGWGPPDA           LPL+VPFAPFSRS+KLGRIADWT       
Sbjct: 3   GFEVGFVPFNPDGWGPPDAAFASAATTTSTLPLNVPFAPFSRSDKLGRIADWTRNINPNA 62

Query: 61  XXXXXXXXXXSDSVFDFTXXXXXXXXXXXXXXXSTFRLVDXXXXXXXXXXXXXXXNQHRP 120
                     SDSVFDFT               STFRLVD               NQHR 
Sbjct: 63  NRPNSKQNA-SDSVFDFTADDSFPAATAAGDDDSTFRLVDGKPPPRPKFGPKWRFNQHRQ 121

Query: 121 QLPQXXXXXXXXXXXXXXXXXXXXXXLYNLNRSNQNQPRREAAAFKSSVDIQPEWNMLDQ 180
           QLPQ                      LYN+NRSNQNQPRREAA FKSSVDIQPEWNMLDQ
Sbjct: 122 QLPQRRDEEVEARKREAEKERARRDRLYNMNRSNQNQPRREAAVFKSSVDIQPEWNMLDQ 181

Query: 181 IPFSTFSKLSFSVAEPEDLLLCGGLEFYDRSYDRVTPKNERRLERFKNRNFFKVTTTDDP 240
           IPFSTFSKLSFSV EPEDLLLCGGLEFYDRS+DR+TPKNERRLERFKNRNFFKVTTTDDP
Sbjct: 182 IPFSTFSKLSFSVPEPEDLLLCGGLEFYDRSFDRITPKNERRLERFKNRNFFKVTTTDDP 241

Query: 241 VIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVIQRVGNKLFFD 287
           VIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVIQRVGNKLFFD
Sbjct: 242 VIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVIQRVGNKLFFD 288