Jatropha Genome Database

JcCB0279751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0279751.10 - phase: 0 
         (237 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008939 conserved hypothetical protein                          270   4e-73
29666.m001450 conserved hypothetical protein                           96   1e-20
56072.m000045 conserved hypothetical protein                           70   6e-13
29631.m001048 conserved hypothetical protein                           49   3e-06

>30174.m008939 conserved hypothetical protein
          Length = 411

 Score =  270 bits (691), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 140/194 (72%), Positives = 160/194 (82%), Gaps = 5/194 (2%)

Query: 1   MSLLARLSRQKXXXXXXXXXXXXARHLSSASTSSKLHDHYAFRPPPSLSPQEPDNPNPTT 60
           M LL RLSR+K            +R+LSSAS SSKLHD Y+F PPPSLSPQ   NPN T 
Sbjct: 1   MLLLNRLSREKPPYPTLL-----SRYLSSASASSKLHDQYSFMPPPSLSPQNHQNPNSTP 55

Query: 61  RKKQKPLYRPPSTLDRTGKKPTHSDLPFDFRYSYTESSQSVRPIGLREPKYSPFGPDRLD 120
           +KK+KPLYRPPS+LDRTGKKPTHSDLPFDFRYSYTESSQSVRPIGLREPKYSPFGPDRLD
Sbjct: 56  KKKRKPLYRPPSSLDRTGKKPTHSDLPFDFRYSYTESSQSVRPIGLREPKYSPFGPDRLD 115

Query: 121 RSWTGVCAPAVDPKVKSLDGTDDPNLEEKRKLMREKIQGDPLTNAERKILVAQCQRNKTK 180
           R+WTGVCAP V+PK+K +DG+++PNLEEKR+  RE+IQG PLTNAERKILV  CQR+KTK
Sbjct: 116 RAWTGVCAPVVEPKLKFVDGSENPNLEEKRRWWREQIQGQPLTNAERKILVESCQRHKTK 175

Query: 181 RQINLGMVFVLFNL 194
           +QINLG   +  N+
Sbjct: 176 KQINLGRDGLTHNM 189


>29666.m001450 conserved hypothetical protein
          Length = 409

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 84/140 (60%), Gaps = 20/140 (14%)

Query: 61  RKKQKPLYRPPSTLD--RTGKKPTHSDLPFDFRYSYTESSQSVRPIGLREPK-YSPFGPD 117
           + K+ P  +P S  +  +  K P  SDLPFDFRYSY+ES  +++PIG REPK +SPFGP 
Sbjct: 92  KAKKAPTNQPGSNENPNKDPKLPLKSDLPFDFRYSYSESDSAIQPIGYREPKRFSPFGPG 151

Query: 118 RLDRSWTGVCAPA---VDPKVKSLDGTDDPNLEEKRKLMREKIQGDPLTNAERKILVAQC 174
           RLDR WTGV AP    VD ++          +EE+R+++     GDPLT  E + LV + 
Sbjct: 152 RLDRKWTGVAAPVQSEVDMEIV---------MEERRRVL-----GDPLTEEEVEELVERY 197

Query: 175 QRNKTKRQINLGMVFVLFNL 194
           + +   RQINLG   V  N+
Sbjct: 198 RHSDCSRQINLGKGGVTHNM 217


>56072.m000045 conserved hypothetical protein
          Length = 748

 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 85/184 (46%), Gaps = 38/184 (20%)

Query: 50  PQEPDNPNPTTRK----KQKPLYRPPSTLDRTGKKPTHSD--------LPFDFRYSYTES 97
           P+ P + +P  R      +KPL  P   +DR        D         PF+F+YSYTE+
Sbjct: 112 PESPTSHHPAFRSISKITKKPL--PEKPIDRNADVKLSEDGLSFVVDGAPFEFKYSYTET 169

Query: 98  SQSVRPIGLREPKYSPFGPDRLDRSWTGVC-APAVDPKVKSLD----------------- 139
            ++ +PI LRE  +SPFGP  + R WTG    P    K++  D                 
Sbjct: 170 PKA-KPIKLREAPFSPFGPTTMGRPWTGRAPLPPSKKKLREFDSFKLPPPDKKGVKPVQK 228

Query: 140 -GTDDPNLEEKRKLMREKIQGDPLTNAERKILVAQCQRNKTKRQINLGMVFVLFNLSILG 198
            G   P    +    RE+I G+PLT  E KIL+  C   KT+RQ+N+G   +  N+  L 
Sbjct: 229 PGPFLPGAGPRYVYSREEILGEPLTTEEVKILIEGCL--KTRRQLNMGRDGLTHNM--LD 284

Query: 199 TVYA 202
            ++A
Sbjct: 285 NIHA 288


>29631.m001048 conserved hypothetical protein
          Length = 561

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 26/129 (20%)

Query: 87  PFDFRYSYTESSQSVRPIGLREPKYSPFGPDRLDRSWTGVCAPAV--------------- 131
           PF+F++SY+E+ + V+P+ +REP + PFGP  + R WTG  AP                 
Sbjct: 99  PFEFQFSYSETPK-VKPLAIREPAFLPFGPPTMPRPWTGK-APLKKSKKKKIPLFSNSIP 156

Query: 132 -DPK--VKSLDGTDD---PNLEEKRKLMREKIQGDPLTNAERKILVAQCQRNKTKRQINL 185
            D K  VK  +   D       E+ K  RE I G PLT  E K LV     +   RQ+NL
Sbjct: 157 NDAKEGVKYFEMPGDLQFGKFPEEVKSRRE-ILGKPLTRWEIKQLVKPLLSD--NRQVNL 213

Query: 186 GMVFVLFNL 194
           G   +  N+
Sbjct: 214 GRDGLTHNM 222