Jatropha Genome Database

JcCB0274991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0274991.10 + phase: 0 
         (97 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29838.m001690 mads box protein, putative                              112   4e-26
30138.m003939 mads box protein, putative                               87   1e-18
30147.m014133 mads box protein, putative                               87   2e-18
30174.m008934 mads box protein, putative                               86   5e-18
29804.m001536 mads box protein, putative                               85   7e-18
29596.m000699 mads box protein, putative                               82   6e-17
30221.m002218 mads box protein, putative                               82   7e-17
29908.m005982 mads box protein, putative                               80   1e-16
30170.m013776 mads box protein, putative                               80   2e-16
29648.m001978 mads box protein, putative                               78   1e-15
29782.m000119 Floral homeotic protein DEFICIENS, putative              77   1e-15
29907.m000663 mads box protein, putative                               76   3e-15
28348.m000077 mads box protein, putative                               76   3e-15
30099.m001672 mads box protein, putative                               72   6e-14
29693.m002039 mads box protein, putative                               72   6e-14
29613.m000367 mads box protein, putative                               72   8e-14
30099.m001671 mads box protein, putative                               70   2e-13
29693.m002042 mads box protein, putative                               69   5e-13
29693.m002041 mads box protein, putative                               69   6e-13
27866.m000233 mads box protein, putative                               67   2e-12
30138.m004061 mads box protein, putative                               67   2e-12
29813.m001508 mads box protein, putative                               65   5e-12
28830.m000229 mads box protein, putative                               65   7e-12
29838.m001672 mads box protein, putative                               65   8e-12
29739.m003627 mads box protein, putative                               59   6e-10
29653.m000299 mads box protein, putative                               56   3e-09
28180.m000391 mads box protein, putative                               54   2e-08
27893.m000228 mads box protein, putative                               52   4e-08
29912.m005524 mads box protein, putative                               49   4e-07
29333.m001063 mads box protein, putative                               45   6e-06

>29838.m001690 mads box protein, putative
          Length = 61

 Score =  112 bits (279), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/58 (94%), Positives = 56/58 (96%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          MTRQKIQIKKIDN TARQVTFSKRRRGLFKKAYELSTLCDAEIAL+VFS TGKLFEYA
Sbjct: 1  MTRQKIQIKKIDNITARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSATGKLFEYA 58


>30138.m003939 mads box protein, putative
          Length = 244

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 49/58 (84%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          M R ++Q+K+I+NK  RQVTFSKRR GL KKA+E+S LCDAE+ALIVFS  GKLFEY+
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLFEYS 58


>30147.m014133 mads box protein, putative
          Length = 213

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 49/58 (84%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          M R KIQ+++I+N T+RQVTFSKRR GL KKAYELS LCDAE+A+I+FS  G+L E+A
Sbjct: 1  MVRGKIQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLSEFA 58


>30174.m008934 mads box protein, putative
          Length = 244

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 48/58 (82%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          M R ++++K+I+NK  RQVTFSKRR GL KKAYELS LCDAE+ALI+FS  GKL+E+ 
Sbjct: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58


>29804.m001536 mads box protein, putative
          Length = 266

 Score = 84.7 bits (208), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 47/58 (81%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          M R KI I++IDN T+RQVTFSKRR GL KKA ELS LCDAE+ +I+FS T KL++YA
Sbjct: 28 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYDYA 85


>29596.m000699 mads box protein, putative
          Length = 262

 Score = 82.0 bits (201), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 48/58 (82%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          M R KI I++IDN T+RQVTFSKRR GL KKA EL+ LCDAE+ +++FS TGKL++++
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFS 58


>30221.m002218 mads box protein, putative
          Length = 233

 Score = 81.6 bits (200), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 46/57 (80%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEY 57
          M R KI IK+I+N+T RQVTFSKRR GL KK +ELS LCDA+I LI+FS TGK+ +Y
Sbjct: 1  MGRGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQY 57


>29908.m005982 mads box protein, putative
          Length = 347

 Score = 80.5 bits (197), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/58 (63%), Positives = 47/58 (81%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          M R K++IK+I+N T RQVTFSKRR GL KKAYELS LCD +IALI+FS +G+L  ++
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58


>30170.m013776 mads box protein, putative
          Length = 230

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 45/54 (83%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKL 54
          M R K+QIK+I+N T RQVTFSKRR GL KKAYELS LCD ++ALI+FS +G+L
Sbjct: 1  MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRL 54


>29648.m001978 mads box protein, putative
          Length = 234

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 47/57 (82%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEY 57
          M R +I+IK+I+N + RQVT+SKRR G+ KKA E++ LCDAE++LI+F+ +GK+ EY
Sbjct: 1  MGRGRIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAEVSLIIFASSGKMHEY 57


>29782.m000119 Floral homeotic protein DEFICIENS, putative
          Length = 235

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLF 55
          M R KI+IKKI+N T RQVT+SKRR G+FKKA EL+ LCDA+++LI+FS +G+ F
Sbjct: 1  MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGRKF 55


>29907.m000663 mads box protein, putative
          Length = 205

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 43/58 (74%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          M R K+Q+K+I+N   RQVTF KRR GL KKA ELS LCDAEI L +FS  GKL++ A
Sbjct: 1  MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLA 58


>28348.m000077 mads box protein, putative
          Length = 215

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 45/53 (84%)

Query: 3  RQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLF 55
          RQKI+IKK++N   R VTFSKR+ G+FKKA ELSTLC AEIA+++FSG GK+F
Sbjct: 18 RQKIEIKKLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSGHGKVF 70


>30099.m001672 mads box protein, putative
          Length = 217

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 43/56 (76%)

Query: 3  RQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          RQKI + K+ N++  QVTFSKRR GLFKKA ELSTLC AEIA+IVFS   K+F + 
Sbjct: 8  RQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSFG 63


>29693.m002039 mads box protein, putative
          Length = 172

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 46/57 (80%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEY 57
          M R+KI++K + + ++RQVTFSKRR GLFKKA EL+TLC A+IA++VFS  GK F +
Sbjct: 1  MGRRKIEMKMVKDTSSRQVTFSKRRTGLFKKANELATLCAAQIAIVVFSPGGKPFSF 57


>29613.m000367 mads box protein, putative
          Length = 183

 Score = 71.6 bits (174), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 42/57 (73%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEY 57
          + RQKI I+KI  K+  QVTFSKRR GLFKKA EL TLC  EIA+IVFS  GK F +
Sbjct: 6  LGRQKIAIEKISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKAFSF 62


>30099.m001671 mads box protein, putative
          Length = 226

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 40/55 (72%)

Query: 3  RQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEY 57
          RQKI I+KI  KT  QVTFSKRR GLFKKA EL TLC  EIA++VFS   K F +
Sbjct: 28 RQKIAIEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSF 82


>29693.m002042 mads box protein, putative
          Length = 220

 Score = 68.6 bits (166), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 3  RQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          RQKI +K+I+N+  R +TFSKRR G++KKA EL TLC AE+ ++VFS  GK F + 
Sbjct: 10 RQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSFG 65


>29693.m002041 mads box protein, putative
          Length = 239

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 3  RQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          RQKI++KKI+N+  R +TFSKRR G++KKA EL TL  AE+A +V+S  GK F +A
Sbjct: 13 RQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSFA 68


>27866.m000233 mads box protein, putative
          Length = 217

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 42/56 (75%)

Query: 3  RQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          RQKI+IK I+ K+  QVTFSKRR GLFKKA ELS LC A++A++ FS   K+F + 
Sbjct: 14 RQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFSPGKKVFAFG 69


>30138.m004061 mads box protein, putative
          Length = 363

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGK 53
          M R K++IK++++ + RQVT+SKRR G+ KKA ELS LCD  I L++FS TGK
Sbjct: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGK 53


>29813.m001508 mads box protein, putative
          Length = 360

 Score = 65.5 bits (158), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGK 53
          M R K++IKK++N   RQ T+ KR+ G+ KKA ELS LCD +I L++FS TGK
Sbjct: 1  MGRVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGK 53


>28830.m000229 mads box protein, putative
          Length = 197

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEY 57
          M R+K Q+  I  ++ARQV+FSKRR G+FKKA EL TLC  E A+++FS  GK F +
Sbjct: 1  MGRKKTQMSLIQGESARQVSFSKRRTGIFKKASELCTLCAVEAAVVIFSPGGKAFTF 57


>29838.m001672 mads box protein, putative
          Length = 207

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 42/56 (75%)

Query: 3  RQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYA 58
          RQ+I++ KI  ++ R VTFSKRR G+FKKA ELSTLC AEI++IVFS   + F + 
Sbjct: 9  RQRIEMVKISKESNRLVTFSKRRYGVFKKASELSTLCGAEISIIVFSPGKRAFSFG 64


>29739.m003627 mads box protein, putative
          Length = 62

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 42/57 (73%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEY 57
          M R+K++I ++++  ARQV +SKR+ G+ KK  EL+TLCD ++ LI+FS +GK   Y
Sbjct: 1  MGRRKLKILRLESVKARQVKYSKRKLGVLKKGKELATLCDVDLGLIMFSPSGKPSLY 57


>29653.m000299 mads box protein, putative
          Length = 166

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 39/57 (68%), Gaps = 3/57 (5%)

Query: 5  KIQIKKI-DNKTARQVTFSKRRRGLFKKAYELSTL--CDAEIALIVFSGTGKLFEYA 58
          KI+IKKI DNKT   VTFSKRR GLFKKA E   L    AE+ALI FS +G+ F + 
Sbjct: 29 KIEIKKIQDNKTGLIVTFSKRRTGLFKKAMEFCNLDGGGAEVALITFSPSGRPFSFG 85


>28180.m000391 mads box protein, putative
          Length = 328

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 34/46 (73%)

Query: 4  QKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFS 49
          +K+ +KK + K  R V+F+KRR GLF KA EL  LCDA++AL+V S
Sbjct: 5  RKLPMKKRETKKQRSVSFTKRRYGLFNKAAELFMLCDAQLALLVSS 50


>27893.m000228 mads box protein, putative
          Length = 349

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 4  QKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGK 53
          +K  +KK++++  R V+F+KRR GLF KA EL  LCDA++A++V S   K
Sbjct: 5  RKRPMKKLESQKQRSVSFTKRRNGLFNKAAELFMLCDAQLAVLVASPCSK 54


>29912.m005524 mads box protein, putative
          Length = 338

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFS 49
          M R K+ ++ I N+ +R +T+ KR++GL KK  E   LCD +  +I+FS
Sbjct: 1  MGRGKLNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFS 49


>29333.m001063 mads box protein, putative
          Length = 291

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query: 1  MTRQKIQIKKIDNKTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFS 49
          MTR+K+++  I N  AR+ +  KRR GL KK  EL+TLC     ++++S
Sbjct: 1  MTRKKVKLVWIVNDAARKASLKKRRIGLLKKVSELTTLCGVSAFVVIYS 49