Jatropha Genome Database

JcCB0273241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0273241.10 - phase: 2 /partial
         (64 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003448 lupus la ribonucleoprotein, putative                     57   2e-09

>29794.m003448 lupus la ribonucleoprotein, putative
          Length = 494

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 5   GEAEKEYWSLLRGNQEKHWQDXXXXXXXXXXXXXXXXHSRYRDNFSGSNRPNKAQKT 61
           GEAEKEYWSLLRGNQEKH                   HSR RDN+SG  RPNKAQK 
Sbjct: 440 GEAEKEYWSLLRGNQEKHRG-NMGNRGRGGKHFRGGKHSRSRDNYSGG-RPNKAQKV 494