Jatropha Genome Database

JcCB0270661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0270661.10 + phase: 0 /partial
         (191 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006089 isoamylase, putative                                    335   7e-93
29776.m000488 isoamylase, putative                                    159   6e-40
28153.m000287 isoamylase, putative                                     89   2e-18

>29908.m006089 isoamylase, putative
          Length = 783

 Score =  335 bits (859), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 169/191 (88%)

Query: 1   GDSAMKGTFATRVSGSADLYRVNKRKPYHSVNFIIAHDGFTLYDLVSYNFKHXXXXXXXX 60
           GDS MKG+FATRV+GSADLYRVNKRKP+HSVNF+IAHDGFTL+DLVSYNFKH        
Sbjct: 519 GDSGMKGSFATRVAGSADLYRVNKRKPFHSVNFVIAHDGFTLHDLVSYNFKHNDANGEGG 578

Query: 61  XXXXXXXYSWNCGFEGETDDPTIKALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGN 120
                  +SWNCGFEGETDDP IKALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGN
Sbjct: 579 NDGSNDNFSWNCGFEGETDDPNIKALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGN 638

Query: 121 NNSYGHDTSINNFQWGLLDAQRSGHFRFFSEVIKFRGTHQVFRHENFLSNNDVTWHEDNW 180
           NNSYGHDTSINNFQW LL AQR+ HF+FFSEVIKFR THQVFRH+NFL+ NDVTWHEDNW
Sbjct: 639 NNSYGHDTSINNFQWELLAAQRNDHFQFFSEVIKFRRTHQVFRHDNFLNQNDVTWHEDNW 698

Query: 181 DNYESKFLAFT 191
           DNYESKFLAFT
Sbjct: 699 DNYESKFLAFT 709


>29776.m000488 isoamylase, putative
          Length = 795

 Score =  159 bits (403), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 86/196 (43%), Positives = 111/196 (56%), Gaps = 6/196 (3%)

Query: 1   GDSAMKGTFATRVSGSADLYRVNKRKPYHSVNFIIAHDGFTLYDLVSYNFKHXXXXXXXX 60
           G     G FA  + GS +LY+   RKP++S+NFI AHDGFTL DLVSYN K+        
Sbjct: 515 GTDGFSGAFAECLCGSPNLYQEGGRKPWNSINFICAHDGFTLADLVSYNNKNNLANGEDN 574

Query: 61  XXXXXXXYSWNCGFEGETDDPTIKALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGN 120
                   SWNCG EGE     +K LR RQM+NF + LM+SQG PM+ MGDEYGHT+ GN
Sbjct: 575 NDGESHNNSWNCGQEGEFASILVKKLRKRQMRNFFVCLMVSQGVPMIYMGDEYGHTKGGN 634

Query: 121 NNSYGHDTSINNFQWGLLDAQRSGHFRFFSEVIKFRGTHQVFRHENFLSNNDVTWH---- 176
           NN+Y HD  IN F+W   +   S  +RF   + KFR   +     +F +   + WH    
Sbjct: 635 NNTYCHDNYINYFRWDKKEESSSDFYRFCRLMTKFRHECESLGLNDFPTAERLQWHGHSP 694

Query: 177 -EDNWDNYESKFLAFT 191
              +W    S+F+AFT
Sbjct: 695 GMPDWSE-TSRFVAFT 709


>28153.m000287 isoamylase, putative
          Length = 872

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 25/196 (12%)

Query: 4   AMKGTFATRVSGSADLYRVNKRKPYHSVNFIIAHDGFTLYDLVSYNFKHXXXXXXXXXXX 63
           ++ G  ATR+ GS D++  N R P  S N+I  + G  L DLVS++              
Sbjct: 601 SLLGDLATRLCGSGDIFS-NGRGPAFSFNYIARNSGLPLVDLVSFS-----------GGE 648

Query: 64  XXXXYSWNCGFEGETDDPTIKALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNS 123
                SWNCG EG T+   +   R +Q++N+   L +S G P++ MGDE G +  G + S
Sbjct: 649 LGSELSWNCGEEGPTNKTAVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSSRG-SIS 707

Query: 124 YGHDTSINNFQWGLLDAQ---RSGHFRFFSEVIKFRGTHQVFRHENFLSNNDVTWHEDN- 179
           YG       F W  L      +   F  F   ++ R +  + +  NFL   ++ WH ++ 
Sbjct: 708 YGDRKP---FDWNALSTSFGNQMTQFISFLSSLRMRRS-DLLQKRNFLKEENIDWHGNDQ 763

Query: 180 ----WDNYESKFLAFT 191
               W++   KFLA T
Sbjct: 764 SPPRWEDPTCKFLAMT 779