Jatropha Genome Database

JcCB0269511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269511.10 - phase: 0 /pseudo
         (238 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29669.m000842 conserved hypothetical protein                           54   4e-08
29788.m000331 conserved hypothetical protein                           51   4e-07
29506.m000168 conserved hypothetical protein                           47   8e-06

>29669.m000842 conserved hypothetical protein
          Length = 207

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 41  TRQTESSSPQH---------ISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGN--PAP 89
           + + +SS P H         I  S  LN  NY  W + +++A+  +N L  + G+  P  
Sbjct: 21  SSKADSSDPNHTHHSDHTGMILFSKTLNGDNYPGWKRAIKLALNLKNKLRFVEGSCEPPS 80

Query: 90  LEKQNIAYTKWEQADLNACSWIINNIEEHLVNNYVEYPTAKALWEGLAE 138
            EK   +Y  W + +    SWIIN ++  + +N + Y TA  +WE L +
Sbjct: 81  KEKHPDSYGSWSRCNDMVHSWIINTLDPKIADNVIYYATAYEVWEVLCD 129


>29788.m000331 conserved hypothetical protein
          Length = 103

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 38  QINTRQTESSSPQHISI---SVKLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQN 94
           ++N+ QT      + S+   SV LN FNY  W++   +A+ GR+ L ++ G     +  +
Sbjct: 3   ELNSSQTSREIEPNTSLRLTSVLLNGFNYVSWSRAASLALLGRSKLSYVNGKKEAPKPSD 62

Query: 95  IAYTKWEQADLNACSWIINNIEEHLVNNYV 124
            ++  W+  D    SWI+N++E  +   +V
Sbjct: 63  PSFDAWQSNDQPVMSWILNSMEPKIAETFV 92


>29506.m000168 conserved hypothetical protein
          Length = 128

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%)

Query: 36  STQINTRQTESSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNI 95
           S+Q       + SP    IS  +N+ NY  W++ +++A+  ++ L +I G  A       
Sbjct: 27  SSQETNHSQNNDSPGMPLISTLMNENNYIPWSRSVKLALGAKDKLGYINGEIAKPASTAK 86

Query: 96  AYTKWEQADLNACSWIINNIEEHLVNNYVEYPTAKALWE 134
            Y  W++ D    +WI+++I +     ++   + K LWE
Sbjct: 87  KYKMWKKTDCLVAAWILSSILKEHAEGFIYCSSTKDLWE 125