Jatropha Genome Database

JcCB0269491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269491.10 - phase: 0 /pseudo/partial
         (452 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27758.m000331 conserved hypothetical protein                          187   8e-48

>27758.m000331 conserved hypothetical protein
          Length = 541

 Score =  187 bits (475), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 118/241 (48%), Positives = 140/241 (58%), Gaps = 36/241 (14%)

Query: 1   MSLETTPPLNLKSGFLLNRRFIASMHPFPPANH-----RRYPAPMQLSFPFRAKTVNRQE 55
           MSLETT  L+LKSGF  NRR I S + FPP NH     R     +  SFPFRAK VNRQ 
Sbjct: 1   MSLETTSTLSLKSGFPFNRRLITSTNAFPPFNHHHHHHRGSSHRLISSFPFRAKNVNRQL 60

Query: 56  TNIPAVLETASVATENQSDSPVRIVALVGKGSISPLKCATWEEVMLHTAKRLKWVDEGYD 115
           T IPAVLE  S  T  QSD PVRIVALVG+GS+SPLKCATWEEVMLHTAKRLKWVDEGY+
Sbjct: 61  TKIPAVLERESAVTHEQSDPPVRIVALVGEGSVSPLKCATWEEVMLHTAKRLKWVDEGYE 120

Query: 116 MLVFTDNLCXXXXXXXXXAKGIEPCRYITDSCHFKSRISQVDPIQXQKCSKHNLLRLISE 175
           M VFTD L            GIE           +  +++ D +     S  + ++ I  
Sbjct: 121 MHVFTDKL-------FQSNDGIE---------QLERALTRADILLIVSISNQDSVKWIQT 164

Query: 176 SCKQTRRILHFRM------KLMGLYLE---------KIIGVSRSKKIKESMEVVKTVWEA 220
           + K    I+ F        KL G Y+E         K+IG+S+SKK  ++ EV KTV EA
Sbjct: 165 NSKVVPNIICFDSSLSLANKLGGSYVENETNGTLFGKLIGISQSKKTNDATEVEKTVSEA 224

Query: 221 W 221
           W
Sbjct: 225 W 225