Jatropha Genome Database

JcCB0268911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0268911.10 + phase: 0 /pseudo
         (463 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004563 Trichohyalin, putative                                  297   6e-81

>29929.m004563 Trichohyalin, putative
          Length = 640

 Score =  297 bits (761), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 215/443 (48%), Positives = 254/443 (57%), Gaps = 14/443 (3%)

Query: 1   MGMKLFXXXXXXXXXXXXXSNIEIDKEFARRYDHNKKREALQRYEELKKKGQIXXXXXXX 60
           MGMKLF             S IEID +FARRY HNKKRE LQRYEELKKKGQI       
Sbjct: 1   MGMKLFDDDENENIDV---SKIEIDDKFARRYVHNKKREDLQRYEELKKKGQIEDSESDS 57

Query: 61  XXXXXXXXXXXXIIKLSKKENLRKFIENLNKVKKRDPSLYNQDSRLFXXXXXXXXXXXXX 120
                       I KLSKK++ ++F  NL KVK+RDPS+Y +D +LF             
Sbjct: 58  ESSESEEDDAE-IKKLSKKKSFKEFFNNLIKVKERDPSIYKKDVKLFESDSDTDTNDDDS 116

Query: 121 XXXXIDXXXXXXXXXXXXXXXDVMAQQLLEEGPEFDDVESSSMK-KTYNEEQDELKKAFL 179
                +               DV AQQL+EEGPEF++ ESSS K KTY EEQ+ELK+AFL
Sbjct: 117 KG---ENEMRDGKKKKAVYLKDVRAQQLIEEGPEFEEGESSSAKRKTYTEEQEELKRAFL 173

Query: 180 DAVKDAEMDTEGDLLKVKEKKNGNDVKADDGEFEKKLGEYFGPETELDENNKFLKDFFEK 239
           +AVKDA  D +GDLL+VKEK    +   +D +FE+KL +YFG E ELDENNKFLK+F EK
Sbjct: 174 EAVKDA-ADVDGDLLRVKEKDLKEEDDGNDVDFEEKLQKYFGAEEELDENNKFLKEFIEK 232

Query: 240 QMWVDRGSEDRRRGFXXXXXXXXXXXXXXXXXXXXXXXXSYNFRYEENAGDRVMGHSRKV 299
           QMWVDR ++DR                            +YNFR+EE+ GDRVMGHSR V
Sbjct: 233 QMWVDRDNKDR--SGVADDEVDDLFRDDEEIERQEKYEETYNFRHEESVGDRVMGHSRIV 290

Query: 300 EGSVRKKENARKEQRKSKEERMKIVEMQRKEEVKHXXXXXXXXXXXXXXXXXXAAGIRXX 359
           EGSVRKKENARKEQRKSK+ERM+I EM+RK E+KH                  AAG+   
Sbjct: 291 EGSVRKKENARKEQRKSKKERMEIAEMERKAELKHLKNLKKKEMNEKLSKVMQAAGVTDD 350

Query: 360 XXXXXXXXXXXXXXXPSEYDKLMKKAFGEEYYNADDVDPGFGSNNXXXXXXXXXXXXXXX 419
                          P EYDK+MKKAF E+YYNADD+DP FGS N               
Sbjct: 351 NDFALDLDDLKKDFDPEEYDKMMKKAFNEDYYNADDLDPEFGSEN--DDDGVDIKKPDFD 408

Query: 420 XXXXLLGLPKGWEAVDNSDGFLA 442
               LLGLPKGW+AVDN +GFLA
Sbjct: 409 KEDELLGLPKGWDAVDN-EGFLA 430