Jatropha Genome Database

JcCB0265081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0265081.10 + phase: 2 /partial
         (231 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001074 DNA-directed RNA polymerase, putative                   274   3e-74

>29646.m001074 DNA-directed RNA polymerase, putative
          Length = 677

 Score =  274 bits (700), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 173/226 (76%), Gaps = 3/226 (1%)

Query: 1   FLLSLPLEERMKKLLIEGPPVQRFSVLKHFAPEDTVEDVLTVVQKHGQLVQGLWAPRTAL 60
           FLLSLPL ER+KKL++EGPPVQRFSVLKHFAP+D+VEDVL V+Q++GQLVQGLWAP+++L
Sbjct: 329 FLLSLPLAERLKKLILEGPPVQRFSVLKHFAPDDSVEDVLKVLQEYGQLVQGLWAPKSSL 388

Query: 61  LFPDSKEVYKPPARDYILLLFSKSLVISTSQITSLPARLKEPVRAFLNLFAVERPSFRDW 120
           LFPD+    K   RDY+LLLFSK+LVI++SQ+ + P ++KE +++FLNLFAVERPSF+DW
Sbjct: 389 LFPDANS--KQGIRDYVLLLFSKNLVINSSQV-NFPVKIKEEIKSFLNLFAVERPSFKDW 445

Query: 121 KFKESPDAAFMKLHPEVVKKQVVIWEGVEKKLTGFLSSSSKGGKQNDKRQPTLAHNLTKE 180
           KFKE  D  F+KL+P++VKKQ   W+  EK+L+     S K   +N   +P + HN  K 
Sbjct: 446 KFKEHTDTTFIKLYPDIVKKQEEAWDNTEKRLSKVFDRSGKASMKNAIPKPPMVHNTVKH 505

Query: 181 LDPHKIAPKSASVNRVPIRTTITSESREALLKVLPKVLQTHKVCRY 226
           LD  K  PK AS  R   +TTIT E+REALLK LPKV Q+HKVC +
Sbjct: 506 LDSEKSMPKIASGMRRLTKTTITVETREALLKALPKVFQSHKVCSF 551