Jatropha Genome Database

JcCB0263761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0263761.10 - phase: 0 /partial
         (256 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008956 DNA binding protein, putative                           394   e-110
30147.m013758 conserved hypothetical protein                           90   8e-19
29822.m003372 DNA-repair protein UVH3, putative                        88   4e-18
30128.m008993 flap endonuclease-1, putative                            52   4e-07

>30174.m008956 DNA binding protein, putative
          Length = 609

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/241 (78%), Positives = 202/241 (83%)

Query: 1   MGVGGKFWDLLKPYARPQGPDFLRDKRVAVDLSYWIVQHETAIKSYVRKPHVRLTFFRTI 60
           MGVGGKFWD+LKPY R +GPDFLR+KRVA+DLSYWIVQHETAIKSY RKPH+RLTFFRTI
Sbjct: 1   MGVGGKFWDILKPYTRHEGPDFLREKRVAIDLSYWIVQHETAIKSYARKPHLRLTFFRTI 60

Query: 61  NLFSKFGAFPVFVVDGIPSPLKXXXXXXXXXXXXGIDVSSLPVAEEGVSVERNRVFSKXX 120
           NLFSKFGAFPVFVVDG PSPLK            GID S LP  EEGVSVERN  F K  
Sbjct: 61  NLFSKFGAFPVFVVDGTPSPLKSRARISRFFRSSGIDSSVLPTPEEGVSVERNGAFLKCV 120

Query: 121 XXXXXXXXXFGMPVLTANGEAEALCAQLNREGLVDACITADSDAFLFGAECVIKCIRPNT 180
                    FGMPVL ANGEAEALCAQLN +GLVDACITADSDAFLFGA+CVIK I+PN+
Sbjct: 121 KECVELLELFGMPVLKANGEAEALCAQLNSQGLVDACITADSDAFLFGAKCVIKSIKPNS 180

Query: 181 KEPFECYQMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGVDTALRFVQTFSEDEIL 240
           KEPFECYQMSDIE+GL LKRKHLIAI+LLVGNDHDL+GVQGIGVDTALRFVQTF EDEIL
Sbjct: 181 KEPFECYQMSDIESGLALKRKHLIAIALLVGNDHDLNGVQGIGVDTALRFVQTFHEDEIL 240

Query: 241 N 241
           N
Sbjct: 241 N 241


>30147.m013758 conserved hypothetical protein
          Length = 586

 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 3/143 (2%)

Query: 105 EEGVSVERN--RVFSKXXXXXXXXXXXFGMPVLTANGEAEALCAQLNREGLVDACITADS 162
           +E  S+ RN    FS+            G+  L +  EAEA CA LN E L D C ++DS
Sbjct: 106 KEACSLPRNMGSEFSRMIKEAKILGLALGISCLDSLEEAEAQCALLNSESLCDGCFSSDS 165

Query: 163 DAFLFGAECVIKCIRPNTKEPFECYQMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGI 222
           D FLFGA  V + I         CY+M+DIE  LG  R  LI ++LL+G+D+   GV+G+
Sbjct: 166 DVFLFGARTVYRDICLGDGGHVVCYEMADIERKLGFGRNSLITLALLLGSDYS-QGVRGL 224

Query: 223 GVDTALRFVQTFSEDEILNGFAS 245
           G ++A + V++  +  +L   AS
Sbjct: 225 GPESACQIVKSVGDHNVLQQIAS 247


>29822.m003372 DNA-repair protein UVH3, putative
          Length = 1641

 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 130  FGMPVLTANGEAEALCAQLNREGLVDACITADSDAFLFGAECVIKCIRPNTKEPFECYQM 189
            FG+P + A  EAEA CA +    LVD  +T DSD FLFGA  V K I  + K   E Y M
Sbjct: 977  FGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARNVYKNIFDDRK-YVETYFM 1035

Query: 190  SDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGVDTALRFVQTFSEDEILNGFASY 246
             DIE  LGL R+ LI ++LL+G+D+   G+ GIG+  A+  V  F E++ L  F  +
Sbjct: 1036 KDIERELGLTREKLIRMALLLGSDY-TEGISGIGIVNAIEVVNAFPEEDGLEKFREW 1091



 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 1  MGVGGKFWDLLKPYARPQGPDFLRDKRVAVDLSYWIVQHETAIKS----YVRKPHVRLTF 56
          MGV G  WDLL P  R    + L  K++A+D S WIVQ   A+++     VR  H+ L F
Sbjct: 1  MGVQG-LWDLLAPVGRRVSVETLSGKKLAIDASIWIVQFMKAMRNEKGEMVRNAHL-LGF 58

Query: 57 FRTINLFSKFGAFPVFVVDGIPSPLK 82
          FR I         PVFV DG    LK
Sbjct: 59 FRRICKLLYLRTKPVFVFDGATPALK 84


>30128.m008993 flap endonuclease-1, putative
          Length = 345

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 130 FGMPVLTANGEAEALCAQLNREGLVDACITADSDAFLFGAECVIK-CIRPNTKE-PFECY 187
            G+PV+ A  EAEA CA L + G V A  + D D+  FGA   ++  + P++++ P   +
Sbjct: 111 MGVPVIEAPSEAEAECAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKVPVMEF 170

Query: 188 QMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGVDTALRFVQ 232
           + S I   L L     I + +L G D+    ++GIG  TAL+ ++
Sbjct: 171 ETSKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGMTALKLIR 214