Jatropha Genome Database

JcCB0259591.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0259591.20 - phase: 0 
         (445 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29942.m000745 geranylgeranyl hydrogenase, putative                    709   0.0  
30138.m004068 geranylgeranyl hydrogenase, putative                    530   e-151

>29942.m000745 geranylgeranyl hydrogenase, putative
          Length = 451

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/444 (79%), Positives = 380/444 (85%), Gaps = 5/444 (1%)

Query: 7   QHFKPTFLCPLNTRTNS----KRRNVTIVSSLSGRKLRXXXXXXXXXXXXXXXXXXXXXI 62
            H   TFLCPL T T+     K + ++I S++SGRKLR                     I
Sbjct: 8   HHLYSTFLCPLYTPTSKSTFFKPQTLSITSAISGRKLRAAVIGGGPAGSSAAEALAAGGI 67

Query: 63  ETFLFERSTSTAKPCGGAIPLCMIDEFSIPLHLIDRHVTRMKIISPSNLTVDFGSKTLKP 122
           ETFLFERSTSTAKPCGGAIPLCM+DEF+IPL+LIDRHVTRMKI+SPSNLTVDFGSKTLKP
Sbjct: 68  ETFLFERSTSTAKPCGGAIPLCMLDEFNIPLNLIDRHVTRMKIVSPSNLTVDFGSKTLKP 127

Query: 123 HESIPMLRREVLDSFLRSRAQSNGAQLIPALVTHLEVPSSSTEPYIIHHTINNT-KQTLA 181
           HESIPMLRREVLDSFLRSR QS GA LI  LV H+++PS   EPYIIHH INN  K  LA
Sbjct: 128 HESIPMLRREVLDSFLRSRVQSKGATLIQGLVMHIDIPSLPKEPYIIHHIINNNIKGELA 187

Query: 182 VDVIIGADGANSKVAKSINAGNYTCAIAFQERIRLPDEKMEYYQNLAEMYVGDDVSPDFY 241
           VDV+IGADGANS+VAKSINAGNY+CAIAFQERIRLPD+KMEYY++LAEMYVGDDVSPDFY
Sbjct: 188 VDVVIGADGANSRVAKSINAGNYSCAIAFQERIRLPDDKMEYYKDLAEMYVGDDVSPDFY 247

Query: 242 AWVFPKCDHVAVGTGTVCAKPDIKLYQKGIRERVRQKINGGKVIKVEAHPIPEHPRPVRV 301
           AWVFPKCDHVAVGTGTVC+K +IK++Q+GIRERVR KI GGKVIKVEAHPIPEHPRP RV
Sbjct: 248 AWVFPKCDHVAVGTGTVCSKQNIKVFQRGIRERVRDKIKGGKVIKVEAHPIPEHPRPTRV 307

Query: 302 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCGEAIVKASEGGEKRVKEEDLKRGYLKEW 361
           RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCGE IVKASEGGEK V EEDLKR YL+EW
Sbjct: 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCGEGIVKASEGGEKMVSEEDLKREYLREW 367

Query: 362 DKKYYSTFRFLDLLQRVFYGSNMAREALVELCGDEYVQRMTFDSYLYKKLANGDRWEDVK 421
           D KY +TFRFLDLLQRVFYGSN+ REALVELCGDEYVQRMTFDSYLYKKLA GDRWEDVK
Sbjct: 368 DNKYVNTFRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSYLYKKLAGGDRWEDVK 427

Query: 422 MGLNTIGSLVRCRILGREMEALKV 445
           M LNT GSLVRCRI+GREME LKV
Sbjct: 428 MVLNTFGSLVRCRIVGREMEGLKV 451


>30138.m004068 geranylgeranyl hydrogenase, putative
          Length = 465

 Score =  530 bits (1364), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/444 (59%), Positives = 324/444 (72%), Gaps = 19/444 (4%)

Query: 16  PLNTRTNSKRRNVTIVSS-----LSGRKLRXXXXXXXXXXXXXXXXXXXXXIETFLFERS 70
           PLN +    RR++ + +S     L  R LR                     IETFL ER 
Sbjct: 27  PLNRQ---HRRSLQVSASKTSPKLQNRNLRVAVIGGGPAGGAAAETLAKGGIETFLIERK 83

Query: 71  TSTAKPCGGAIPLCMIDEFSIPLHLIDRHVTRMKIISPSNLTVDFGSKTLKPHESIPMLR 130
               KPCGGAIPLCM+ EF +PL +IDR VT+MK+ISPSN+ VD G +TLKPHE I M+R
Sbjct: 84  LDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNIAVDIG-QTLKPHEYIGMVR 142

Query: 131 REVLDSFLRSRAQSNGAQLIPALVTHLEVP--SSSTEPYIIHHT-----INNT--KQTLA 181
           REVLDS+LR RAQSNGA++I  L   L++P  S +  PY++H+      +  T  K+TL 
Sbjct: 143 REVLDSYLRERAQSNGAKVINGLFLKLDIPKGSGNNAPYVLHYNEYDGKVGGTGQKKTLE 202

Query: 182 VDVIIGADGANSKVAKSINAGNYTCAIAFQERIRLPDEKMEYYQNLAEMYVGDDVSPDFY 241
           VD +IGADGANS+VAKSI AG+Y  AIAFQERI++PD+KM YY+NLAEMYVGDDVSPDFY
Sbjct: 203 VDAVIGADGANSRVAKSIGAGDYDYAIAFQERIKIPDDKMVYYENLAEMYVGDDVSPDFY 262

Query: 242 AWVFPKCDHVAVGTGTVCAKPDIKLYQKGIRERVRQKINGGKVIKVEAHPIPEHPRPVRV 301
            WVFPKCDHVAVGTGTV  K DIK +Q   R R + KI GGK+I+VEAHPIPEHPRP R+
Sbjct: 263 GWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRL 322

Query: 302 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCGEAIVKASEGGEKRVKEEDLKRGYLKEW 361
             RVALVGDAAGYVTKCSGEGIYFAAKSGRMC EAI++ SE G++ V E DL++ YL++W
Sbjct: 323 LDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSEYGKRMVDEIDLRK-YLEKW 381

Query: 362 DKKYYSTFRFLDLLQRVFYGSNMAREALVELCGDEYVQRMTFDSYLYKKLANGDRWEDVK 421
           DK Y+ T++ LD+LQ+VFY SN AREA VE+C DEYVQ+MTFDSYLYK++  G+  +D+K
Sbjct: 382 DKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLDDLK 441

Query: 422 MGLNTIGSLVRCRILGREMEALKV 445
           +  NTIGSLVR   L +EM  L V
Sbjct: 442 LAFNTIGSLVRANALRKEMNKLSV 465