Jatropha Genome Database

JcCB0256761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0256761.10 - phase: 0 /partial
         (100 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001106 hypothetical protein                                    142   4e-35

>28320.m001106 hypothetical protein
          Length = 407

 Score =  142 bits (357), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/104 (69%), Positives = 78/104 (75%), Gaps = 4/104 (3%)

Query: 1   MDGKIEISIDKLPVKRLEAIDENGAERFPTDVGYDEKRVSLIRRIDFAWAV----XXXXX 56
           M+GK+EIS+DKLPVKRLEAI+ENG ERFPTDVGYDEKRVSLIRRIDF WAV         
Sbjct: 1   MEGKVEISLDKLPVKRLEAIEENGVERFPTDVGYDEKRVSLIRRIDFGWAVEKQDEEKNK 60

Query: 57  XXXXXXXXXXXXXXXTTPWPWQSMVENLQLAHQELSIIIDLINT 100
                          +TPWPWQSMVENLQLAHQELS+IIDLINT
Sbjct: 61  EKKKQKTKSSKESSSSTPWPWQSMVENLQLAHQELSVIIDLINT 104