Jatropha Genome Database

JcCB0254931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0254931.10 - phase: 0 
         (77 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001111 conserved hypothetical protein                           89   4e-19
29848.m004648 conserved hypothetical protein                           79   4e-16
29680.m001658 conserved hypothetical protein                           72   6e-14

>28320.m001111 conserved hypothetical protein
          Length = 130

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/45 (93%), Positives = 45/45 (100%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTENF 57
           EILKNNGLAIE+KIMTSTVDM+DE+RGRPVQKAKIEILLGKTENF
Sbjct: 66  EILKNNGLAIERKIMTSTVDMKDESRGRPVQKAKIEILLGKTENF 110


>29848.m004648 conserved hypothetical protein
          Length = 128

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/45 (86%), Positives = 41/45 (91%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTENF 57
           EILKNNGLAIEKKIMTSTVDMR++  GRPV KAKIEILLGKTE F
Sbjct: 66  EILKNNGLAIEKKIMTSTVDMREDTGGRPVPKAKIEILLGKTEKF 110


>29680.m001658 conserved hypothetical protein
          Length = 153

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 40/45 (88%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTENF 57
           EILKNNGLA EKK++TSTV M+DE +GR VQKAKIEI+LGK+E F
Sbjct: 90  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKF 134