Jatropha Genome Database

JcCB0252341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0252341.10 + phase: 1 /partial
         (100 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27613.m000623 40S ribosomal protein S8, putative                      150   1e-37
29447.m000031 40S ribosomal protein S8, putative                      143   2e-35

>27613.m000623 40S ribosomal protein S8, putative
          Length = 219

 Score =  150 bits (379), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/75 (94%), Positives = 73/75 (97%)

Query: 26  VKKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMACISSRPGQCGRADGYILEGKELEFY 85
           VKKSNHVLRKLEKRQQ RKLDPHIEEQF GGRL+ACISSRPGQCGRADGYILEGKELEFY
Sbjct: 145 VKKSNHVLRKLEKRQQIRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFY 204

Query: 86  MKKIQRKKGKGAGAA 100
           MKK+QRKKGKGAGAA
Sbjct: 205 MKKLQRKKGKGAGAA 219


>29447.m000031 40S ribosomal protein S8, putative
          Length = 221

 Score =  143 bits (360), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/74 (90%), Positives = 71/74 (95%)

Query: 27  KKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMACISSRPGQCGRADGYILEGKELEFYM 86
           KKSNHV+RKLEKRQ+ RKLD HIEEQF GGRL+ACISSRPGQCGRADGYILEGKELEFYM
Sbjct: 148 KKSNHVIRKLEKRQKDRKLDAHIEEQFWGGRLLACISSRPGQCGRADGYILEGKELEFYM 207

Query: 87  KKIQRKKGKGAGAA 100
           KK+QRKKGKGAGAA
Sbjct: 208 KKLQRKKGKGAGAA 221