Jatropha Genome Database

JcCB0250351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0250351.10 + phase: 0 
         (126 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004535 hypothetical protein                                     94   2e-20
29917.m001999 conserved hypothetical protein                           52   8e-08
27504.m000635 conserved hypothetical protein                           47   3e-06
29761.m000434 conserved hypothetical protein                           45   1e-05

>30076.m004535 hypothetical protein
          Length = 120

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 80/128 (62%), Gaps = 11/128 (8%)

Query: 1   MIILNRRDQMAHNLSIKLSELAIREWEGEERENLIVDSVDEKAKTETTTNL--DCTTPTA 58
           MI   + D      SI ++++ I   EG E  NL     +EK+ TE TT    DCTTPTA
Sbjct: 2   MIHCRQDDNNPRTPSINIADIVI---EGGENGNL-TPVEEEKSNTEKTTTAVSDCTTPTA 57

Query: 59  KENKIPDVMTCPPAPKKRKASLAVGDNASNKVMATKEFFDSPVLDVMFDIGINKVSSKVS 118
           KE KIPDVMTCPPAP+KRK SL+V     N+V   K+FF SP L+VM  +  ++VSSK+S
Sbjct: 58  KEYKIPDVMTCPPAPRKRKVSLSV---KRNRVRVVKQFFTSPELEVMLGMS-SRVSSKIS 113

Query: 119 GSTPKRHR 126
            S+ +R R
Sbjct: 114 WSS-RRFR 120


>29917.m001999 conserved hypothetical protein
          Length = 110

 Score = 51.6 bits (122), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 54  TTPTAKENKIPDVMTCPPAPKKRKASLAVGDNASNKVMATKEFFDSPVLDVMFDIGINKV 113
           TTPTAKE++IP+ + CPPAP+KR+ S        N     +EFF  P L+ +F   + K 
Sbjct: 56  TTPTAKESRIPERLPCPPAPRKRRPSRC------NYNSGVREFFSPPDLESVFKCYVEKA 109


>27504.m000635 conserved hypothetical protein
          Length = 101

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 8/62 (12%)

Query: 46  ETTTNLDC-TTPTAKENKIPDVMTCPPAPKKRKASLAVGDNASNKVMATKEFFDSPVLDV 104
           E+  N +C TTPT+++ + P  + CPPAPKKRKA+L    N SN     +EFF  P L+ 
Sbjct: 43  ESDQNDECSTTPTSEQARTPARLMCPPAPKKRKATLKC--NYSN-----REFFIPPDLET 95

Query: 105 MF 106
           +F
Sbjct: 96  VF 97


>29761.m000434 conserved hypothetical protein
          Length = 129

 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 56  PTAKENKIPDVMTCPPAPKKRKASLAVGDNASNKVMATKEFFDSPVLDVMFDIGINKVSS 115
           P A+  KIP +++CPPAP KR+    V  N S+K+     FF SP +++ F +  N +++
Sbjct: 75  PKAQRFKIPKLLSCPPAPMKRR----VASNWSSKISPI-TFFASPDIELFFLLAFNNITA 129