Jatropha Genome Database

JcCB0249501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0249501.20 + phase: 0 /pseudo/partial
         (67 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014177 clathrin coat assembly protein ap17, putative            76   3e-15

>30170.m014177 clathrin coat assembly protein ap17, putative
          Length = 142

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/39 (92%), Positives = 37/39 (94%)

Query: 1  QIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVYNLV 39
           IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEV+ LV
Sbjct: 1  MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLV 39