Jatropha Genome Database

JcCB0249431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0249431.10 + phase: 0 /partial
         (196 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29589.m001265 superoxide dismutase [cu-zn], putative                  248   2e-66
30128.m008673 cu/zn superoxide dismutase, putative                    154   2e-38
29950.m001121 superoxide dismutase [cu-zn], putative                  147   4e-36
30190.m011071 superoxide dismutase copper chaperone, putative          58   3e-09

>29589.m001265 superoxide dismutase [cu-zn], putative
          Length = 213

 Score =  248 bits (632), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/197 (69%), Positives = 144/197 (73%), Gaps = 12/197 (6%)

Query: 1   MAAHTILAASPSSHPLLYPF--PNXXXXXXXXXXXXFHGVS-LKLPRQSLPLSXXXXXXX 57
           MAAHTI+AASPS H LL P   PN            FHG S LKL RQS+ LS       
Sbjct: 1   MAAHTIIAASPSYHALLSPASSPNLTHSL-------FHGNSVLKLSRQSVALSLSSAAKK 53

Query: 58  XXXXXXXXXXXXXXXXXXGTSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGD 117
                             G SNVEGVVTLTQ DDGPTTVNVR+TGLTPG HGFHLHEYGD
Sbjct: 54  SLTVVAATKKAVAVLK--GNSNVEGVVTLTQGDDGPTTVNVRITGLTPGLHGFHLHEYGD 111

Query: 118 TTNGCISTGAHFNPNNKTHGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAV 177
           TTNGC+STGAHFNP   THG+PED+IRHAGDLGNIVANADGVAEATIVD+QIPLSGPNAV
Sbjct: 112 TTNGCMSTGAHFNPKGLTHGSPEDDIRHAGDLGNIVANADGVAEATIVDSQIPLSGPNAV 171

Query: 178 VGRALVVHELEDDLGKG 194
           +GRALVVHELEDDLGKG
Sbjct: 172 IGRALVVHELEDDLGKG 188


>30128.m008673 cu/zn superoxide dismutase, putative
          Length = 152

 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 88/118 (74%)

Query: 77  TSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKTH 136
           +  V+G +  TQE DGPTTV   ++GL PG HGFH+H  GDTTNGC+STG H+NP  K H
Sbjct: 11  SEGVKGTIFFTQEADGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEH 70

Query: 137 GAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKG 194
           GAP DE RHAGDLGN+    DG A  TIVD QIPLSGPN+++GRA+VVH   DDLGKG
Sbjct: 71  GAPGDENRHAGDLGNVTVGDDGTATFTIVDTQIPLSGPNSIIGRAVVVHADPDDLGKG 128


>29950.m001121 superoxide dismutase [cu-zn], putative
          Length = 145

 Score =  147 bits (370), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 90/120 (75%)

Query: 76  GTSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKT 135
           G  +V+G +   Q+  GPT V  R++GL+PG HGFH+H  GDTTNGC STG H+NP  + 
Sbjct: 15  GDPHVKGSLQFIQQTHGPTYVTGRISGLSPGLHGFHIHALGDTTNGCNSTGPHYNPLKRN 74

Query: 136 HGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKGN 195
           HGAP  E RHAGDLGNIV  +DG+AE +I D QIPL+GP++++GRA+VVH   DDLGKGN
Sbjct: 75  HGAPFHEERHAGDLGNIVTGSDGIAEISIKDMQIPLTGPHSILGRAVVVHADPDDLGKGN 134


>30190.m011071 superoxide dismutase copper chaperone, putative
          Length = 330

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 10/112 (8%)

Query: 79  NVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNK-THG 137
           ++ GVV   Q +     +    +GL+PG HG+ ++E+GD T G  STG  +NP+N+ T  
Sbjct: 183 DIFGVVRFAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVYNPSNQGTEK 242

Query: 138 APEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELED 189
            P+      GDLG +  + +G  EA    ++  L   + ++GR++VV+  ED
Sbjct: 243 EPQ------GDLGTLEVDENG--EAFFSGSKQKLRVVD-LIGRSVVVYGTED 285