Jatropha Genome Database

JcCB0247731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0247731.10 + phase: 0 /partial
         (187 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28637.m000206 Diaminopimelate epimerase, putative                     365   e-102
35819.m000029 Diaminopimelate epimerase, putative                     124   2e-29

>28637.m000206 Diaminopimelate epimerase, putative
          Length = 369

 Score =  365 bits (936), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/187 (91%), Positives = 179/187 (95%)

Query: 1   VDNRDSTEPRVTPEQAVKLCDRNFGIGADGVIFAMPGTNGTDYSMRIFNSDGSEPEMCGN 60
           VDNRDSTEPR+TPEQAV+LCDRNFGIGADGVIFAMPGTNGTDYSMRIFNSDGSEPEMCGN
Sbjct: 100 VDNRDSTEPRITPEQAVRLCDRNFGIGADGVIFAMPGTNGTDYSMRIFNSDGSEPEMCGN 159

Query: 61  GVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKVKVDMGEPILKASDVPTRLPA 120
           GVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKVKVDMGEPILKASDVPTRL  
Sbjct: 160 GVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKVKVDMGEPILKASDVPTRLRE 219

Query: 121 NKDDAVVKSELNVDGETWNVTCVSMGNPHCVTFGTKENKDLLVDNLNLAEIGPKFEHHAV 180
           NK DAVVK++LN+DG TWNVTCVSMGNPHCVTFG+ EN+DL VD LNLAEIGPKFEHH V
Sbjct: 220 NKGDAVVKAKLNIDGVTWNVTCVSMGNPHCVTFGSNENQDLQVDKLNLAEIGPKFEHHDV 279

Query: 181 FPARTNT 187
           FPARTNT
Sbjct: 280 FPARTNT 286


>35819.m000029 Diaminopimelate epimerase, putative
          Length = 271

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 99/188 (52%), Gaps = 20/188 (10%)

Query: 4   RDSTEPRVTPEQAVKLCDRNFGIGADGVIFAMPGTNG-TDYSMRIFNSDGSEPEMCGNGV 62
           R S E  +T     +L DR+FGIG D ++          D+  RIFN+DGSE E CGNG 
Sbjct: 15  RQSIE--LTESAVRQLADRHFGIGCDQLLLVEKSDRSDIDFRYRIFNADGSEVEQCGNGA 72

Query: 63  RCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKVKVDMGEPILKASDVPTRLPANK 122
           RCF RF+ + + L  K    + T  G+I+P ++ +G V VDMG P+      P+ +P + 
Sbjct: 73  RCFVRFVHD-QGLTDKHEIRVETAKGIIMPRLEANGLVTVDMGAPVFD----PSEIPFDS 127

Query: 123 DDAVVKSELNVDGETWNVTCVSMGNPHCVTFGTKENKDLLVDNLNLAEI---GPKFEHHA 179
           D   +   L++DG    ++ +SMGNPH V          +V+N+  A +   GP  EHH 
Sbjct: 128 DQPALTYPLDLDGNVVEISAISMGNPHAVQ---------VVENIETAPVETQGPLIEHHQ 178

Query: 180 VFPARTNT 187
            FP R N 
Sbjct: 179 RFPNRVNA 186