Jatropha Genome Database

JcCB0242921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242921.10 - phase: 1 /pseudo
         (185 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004704 transcription factor, putative                          340   2e-94

>29929.m004704 transcription factor, putative
          Length = 398

 Score =  340 bits (873), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 165/185 (89%), Positives = 177/185 (95%)

Query: 1   SGRPSLNLERRLDHDGHPLAITAPDAVAASGVPPWNWRETPGNGPENQSFGGRVITVKYL 60
           SGRP+LNLERRLDHDGHPLAITA DAVAASGVPPWNWRETPG+G E QSFGGRVITVKY 
Sbjct: 214 SGRPTLNLERRLDHDGHPLAITAADAVAASGVPPWNWRETPGSGAEGQSFGGRVITVKYG 273

Query: 61  DYTRRVGVDGTTDAIKEAIKSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLDEGL 120
           DYTRR+G+DGT DAI+EA+KSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLDEGL
Sbjct: 274 DYTRRIGIDGTADAIREAVKSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLDEGL 333

Query: 121 AVKVCLYDESDHMPVHTEEKVFYTEDDYRDFLTRRGWTCLREFDGYRNVDNMDDLRPGAL 180
           A+KVCLYDESDH+PVHTEEKVFYTEDDYR+FL RRGWTCLREFDGYRN+DNMDDLRPG +
Sbjct: 334 AIKVCLYDESDHIPVHTEEKVFYTEDDYREFLVRRGWTCLREFDGYRNIDNMDDLRPGVI 393

Query: 181 YRGVT 185
           YRG +
Sbjct: 394 YRGSS 398