Jatropha Genome Database

JcCB0242781.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242781.20 + phase: 0 /partial
         (170 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003529 26S protease regulatory subunit, putative               245   6e-66

>29842.m003529 26S protease regulatory subunit, putative
          Length = 587

 Score =  245 bits (626), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 131/173 (75%), Positives = 141/173 (81%), Gaps = 3/173 (1%)

Query: 1   MLQVAYADSDQAASKPTLSPDSPSSYQDLEEIAKKERQRIEELLRSKGMKYGSYPRFTVA 60
           M QVAYADSDQAA+KP+L  +SPSSY+DLEEIA KERQRIE LL+ +G+K GSYPRF VA
Sbjct: 71  MFQVAYADSDQAAAKPSLPSESPSSYKDLEEIATKERQRIEGLLKLRGIKNGSYPRFMVA 130

Query: 61  LKGQKVTIKFQIPPACDVPQLIANLAMNLGLKVDERGGGSDMRLRAWDSAVAWQLTLSCP 120
           +KGQKVTIKFQIPPACD   LIANL  NLGLKVDER GGSDM LRAWDSAVAWQLTLS P
Sbjct: 131 VKGQKVTIKFQIPPACDALHLIANLVSNLGLKVDERAGGSDMLLRAWDSAVAWQLTLSSP 190

Query: 121 EKQKESHGDNSSFAE---PEGDLCILLFRSLISRDKAEIEFIKSGRLSETELD 170
           EK KE+  D   F +    EGDLCI LFRSLIS DKAEIEFIK G LS TELD
Sbjct: 191 EKHKEAGVDKGQFVDMNTAEGDLCIFLFRSLISTDKAEIEFIKGGSLSTTELD 243