Jatropha Genome Database

JcCB0242781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242781.10 + phase: 1 /partial
         (352 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003528 conserved hypothetical protein                          278   2e-75

>29842.m003528 conserved hypothetical protein
          Length = 358

 Score =  278 bits (712), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 184/368 (50%), Positives = 209/368 (56%), Gaps = 34/368 (9%)

Query: 9   MDSPSRIVS-QPPRLLLSPCSGGRRSSDSNS--PEFEFWMLQNPSFPEPNLLSADELFVD 65
           MDSP +I S Q P   LSPC+   R   S+S  PEFEFW + NPSFPEPN+LSADELFVD
Sbjct: 1   MDSPRKIASSQEP---LSPCTSSGRRRSSDSNSPEFEFWRVPNPSFPEPNILSADELFVD 57

Query: 66  GVXXXXXXXXXXXXXXXXXXXXXXXXXXDFEPQLEL-GPQISYETIAAESAA-PLTASKR 123
           GV                              Q E  GPQIS+++IAAES   PLTASKR
Sbjct: 58  GVLLPLHLLHLHNHNHDPGPQPDPEPPNS---QSEKPGPQISHKSIAAESVGTPLTASKR 114

Query: 124 WKDIFKKSDKKTATAQNQXXXXXXXXXXXXXXSQSGATSG-AELNINIWPFARSRSEGNS 182
           WKDIFKK + K  +++NQ              +QSGATS  AELNINIWPF+RSRS GNS
Sbjct: 115 WKDIFKKGENKATSSKNQRDKDNDREKKKEKKNQSGATSSSAELNINIWPFSRSRSAGNS 174

Query: 183 ASRPRMFPGAPGARKVSSAPCSRSNSAGESKSRKWPTSPGRGGVHLGRSSPVWQVRRGAA 242
            +RP MFPG    RKVSSAPCSRSNSAGESKSRKWP+SPGR   HLGRSSPVWQ RRG+ 
Sbjct: 175 GARPTMFPGT--TRKVSSAPCSRSNSAGESKSRKWPSSPGR--AHLGRSSPVWQARRGSG 230

Query: 243 GGWSSKSVYSEPVSRNSEKGMSKK-VTDRPRKTAAXXXXXXXXXKAKVVNLNVPTCIGYR 301
           G  +  S    PVSR+SEK  SKK V+    +            K KVVNLNVP C+ YR
Sbjct: 231 GSRTKTSNTEAPVSRSSEKMASKKKVSVSGGEHRRNKTTIGDNSKRKVVNLNVPMCMAYR 290

Query: 302 QQLSCRSHESSGI-----------------RDCTXXXXXXXXXXXXXXXXXXXXHFFNLR 344
           Q LSCRS E+S                    + T                    + FNLR
Sbjct: 291 QHLSCRSDENSATGISNTTSTSITITATAIAEATIVDSSNSISSTASNLATGGGNLFNLR 350

Query: 345 SLFTKKVY 352
           SLFTKKVY
Sbjct: 351 SLFTKKVY 358