Jatropha Genome Database

JcCB0238051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0238051.10 - phase: 1 /partial
         (181 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008793 conserved hypothetical protein                          213   4e-56
29912.m005464 conserved hypothetical protein                           59   2e-09

>30174.m008793 conserved hypothetical protein
          Length = 480

 Score =  213 bits (542), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 125/157 (79%), Gaps = 9/157 (5%)

Query: 1   EHSPRHSGNST-HAQELVTFSSAQTEEFPDGDCASSRQNHSTFPEPSTSIKPSTSATAAP 59
           E+S R SGNST HAQELV FSS Q+E+  D DC SS   HSTF        PSTSATA P
Sbjct: 45  EYSSRDSGNSTTHAQELVIFSSGQSEQPLDDDCPSSSHGHSTFS------APSTSATALP 98

Query: 60  SIQ--ITRTSSDGPSQNNSAIVPSSHSGQNGISIFQGLIERARRTVRGSADDIGWMQRAS 117
            I   IT+TS +G SQN +AI+PS+ SGQNG+SIFQGLIERARRTVRGSADDIGWM+RAS
Sbjct: 99  HIHNGITKTSPNGLSQNTNAIIPSNTSGQNGMSIFQGLIERARRTVRGSADDIGWMERAS 158

Query: 118 GMPPVEDGTGRFMEVLDNIRHGLHKLPNSMVYLLVPG 154
            +P VEDGT RFME+LDNIRHGLHKLPNS+VYLLVPG
Sbjct: 159 QLPSVEDGTERFMEILDNIRHGLHKLPNSVVYLLVPG 195


>29912.m005464 conserved hypothetical protein
          Length = 337

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 119 MPPVEDGTGRFMEVLDNIRHGLHKLPNSMVYLLVPG 154
           M PVEDGT RF+E+L  IR+G H LPNS VYLL+PG
Sbjct: 1   MAPVEDGTARFLELLGKIRNGEHVLPNSFVYLLIPG 36