Jatropha Genome Database

JcCB0237541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0237541.20 + phase: 0 /pseudo/partial
         (56 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003777 tpr repeat nuclear phosphoprotein, putative              81   1e-16

>29739.m003777 tpr repeat nuclear phosphoprotein, putative
          Length = 1065

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/38 (100%), Positives = 38/38 (100%)

Query: 1  NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
          NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
Sbjct: 10 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 47