Jatropha Genome Database
- JcCB0236701.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0236701.10 - phase: 2 /partial
(116 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30138.m003939 mads box protein, putative 124 9e-30
30174.m008934 mads box protein, putative 103 2e-23
30221.m002218 mads box protein, putative 93 2e-20
30147.m014133 mads box protein, putative 93 3e-20
29648.m001978 mads box protein, putative 93 3e-20
29596.m000699 mads box protein, putative 89 4e-19
29804.m001536 mads box protein, putative 89 5e-19
29907.m000663 mads box protein, putative 88 9e-19
29838.m001690 mads box protein, putative 85 6e-18
29908.m005982 mads box protein, putative 82 7e-17
30170.m013776 mads box protein, putative 81 1e-16
29782.m000119 Floral homeotic protein DEFICIENS, putative 80 2e-16
29693.m002039 mads box protein, putative 70 2e-13
30138.m004061 mads box protein, putative 70 3e-13
29693.m002042 mads box protein, putative 66 3e-12
30099.m001672 mads box protein, putative 64 2e-11
29813.m001508 mads box protein, putative 64 2e-11
28348.m000077 mads box protein, putative 63 4e-11
27866.m000233 mads box protein, putative 63 4e-11
28830.m000229 mads box protein, putative 62 7e-11
29693.m002041 mads box protein, putative 61 9e-11
29613.m000367 mads box protein, putative 61 1e-10
30099.m001671 mads box protein, putative 59 5e-10
29838.m001672 mads box protein, putative 59 5e-10
29739.m003627 mads box protein, putative 57 2e-09
29912.m005524 mads box protein, putative 57 3e-09
30190.m010925 conserved hypothetical protein 54 2e-08
27893.m000228 mads box protein, putative 49 5e-07
29653.m000299 mads box protein, putative 49 6e-07
28180.m000391 mads box protein, putative 46 4e-06
>30138.m003939 mads box protein, putative
Length = 244
Score = 124 bits (311), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 63
MGRGR+QLKRIENKI+RQVTFSKRR GLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 60
Query: 64 S 64
S
Sbjct: 61 S 61
>30174.m008934 mads box protein, putative
Length = 244
Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 56/59 (94%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 62
MGRGR++LKRIENKI+RQVTFSKRR GLLKKA+E+SVLCDAEVALI+FS++GKL+E+
Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGN 59
>30221.m002218 mads box protein, putative
Length = 233
Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 52/60 (86%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 63
MGRG+I +KRIEN+ +RQVTFSKRR GLLKK HE+SVLCDA++ LI+FS+ GK+ +Y T+
Sbjct: 1 MGRGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCTE 60
>30147.m014133 mads box protein, putative
Length = 213
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 54/61 (88%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 63
M RG+IQ++RIEN SRQVTFSKRR GLLKKA+E+SVLCDAEVA+I+FS KG+L E++++
Sbjct: 1 MVRGKIQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLSEFASN 60
Query: 64 S 64
Sbjct: 61 E 61
>29648.m001978 mads box protein, putative
Length = 234
Score = 92.8 bits (229), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 53/61 (86%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 63
MGRGRI++KRIEN +RQVT+SKRR G++KKA EI+VLCDAEV+LI+F++ GK+ EY +
Sbjct: 1 MGRGRIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAEVSLIIFASSGKMHEYCSP 60
Query: 64 S 64
S
Sbjct: 61 S 61
>29596.m000699 mads box protein, putative
Length = 262
Score = 89.0 bits (219), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 53/61 (86%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 63
MGRG+I ++RI+N SRQVTFSKRR GLLKKA E+++LCDAEV +++FS+ GKL+++S+
Sbjct: 1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60
Query: 64 S 64
S
Sbjct: 61 S 61
>29804.m001536 mads box protein, putative
Length = 266
Score = 88.6 bits (218), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 52/61 (85%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 63
MGRG+I ++RI+N SRQVTFSKRR GLLKKA E+S+LCDAEV +I+FS+ KL++Y++
Sbjct: 28 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYDYAST 87
Query: 64 S 64
S
Sbjct: 88 S 88
>29907.m000663 mads box protein, putative
Length = 205
Score = 87.8 bits (216), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 49/59 (83%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 62
M RG++Q+KRIEN + RQVTF KRR+GLLKKA E+SVLCDAE+ L +FS GKL++ +T
Sbjct: 1 MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLAT 59
>29838.m001690 mads box protein, putative
Length = 61
Score = 85.1 bits (209), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 50/59 (84%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 62
M R +IQ+K+I+N +RQVTFSKRR GL KKA+E+S LCDAE+AL+VFS GKLFEY++
Sbjct: 1 MTRQKIQIKKIDNITARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSATGKLFEYAS 59
>29908.m005982 mads box protein, putative
Length = 347
Score = 81.6 bits (200), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 50/62 (80%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 63
MGR ++++KRIEN +RQVTFSKRR GL+KKA+E+S+LCD ++ALI+FS G+L +S
Sbjct: 1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGR 60
Query: 64 SR 65
R
Sbjct: 61 KR 62
>30170.m013776 mads box protein, putative
Length = 230
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 47/54 (87%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKL 57
MGR ++Q+KRIEN +RQVTFSKRR GL+KKA+E+SVLCD +VALI+FS G+L
Sbjct: 1 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRL 54
>29782.m000119 Floral homeotic protein DEFICIENS, putative
Length = 235
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 47/55 (85%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLF 58
MGRG+I++K+IEN +RQVT+SKRR G+ KKA E++VLCDA+V+LI+FS G+ F
Sbjct: 1 MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGRKF 55
>29693.m002039 mads box protein, putative
Length = 172
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 45/55 (81%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLF 58
MGR +I++K +++ SRQVTFSKRRTGL KKA+E++ LC A++A++VFS GK F
Sbjct: 1 MGRRKIEMKMVKDTSSRQVTFSKRRTGLFKKANELATLCAAQIAIVVFSPGGKPF 55
>30138.m004061 mads box protein, putative
Length = 363
Score = 69.7 bits (169), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 43/53 (81%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGK 56
MGR ++++KR+E+ +RQVT+SKRR G+LKKA E+S+LCD + L++FS GK
Sbjct: 1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGK 53
>29693.m002042 mads box protein, putative
Length = 220
Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 5 GRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDS 64
GR +I +KRIEN+ R +TFSKRR+G+ KKA E+ LC AEV ++VFS GK F + S
Sbjct: 9 GRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSFGHPS 68
>30099.m001672 mads box protein, putative
Length = 217
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 5 GRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEY 60
GR +I + ++ N+ + QVTFSKRR+GL KKA E+S LC AE+A+IVFS K+F +
Sbjct: 7 GRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSF 62
>29813.m001508 mads box protein, putative
Length = 360
Score = 63.5 bits (153), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 41/53 (77%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGK 56
MGR ++++K++EN RQ T+ KR+ G++KKA E+S+LCD ++ L++FS GK
Sbjct: 1 MGRVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGK 53
>28348.m000077 mads box protein, putative
Length = 215
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 42/54 (77%)
Query: 5 GRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLF 58
GR +I++K++EN R VTFSKR+ G+ KKA E+S LC AE+A+++FS GK+F
Sbjct: 17 GRQKIEIKKLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSGHGKVF 70
>27866.m000233 mads box protein, putative
Length = 217
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 41/54 (75%)
Query: 5 GRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLF 58
GR +I++K IE K + QVTFSKRR GL KKA E+S+LC A+VA++ FS K+F
Sbjct: 13 GRQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFSPGKKVF 66
>28830.m000229 mads box protein, putative
Length = 197
Score = 61.6 bits (148), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLF 58
MGR + Q+ I+ + +RQV+FSKRRTG+ KKA E+ LC E A+++FS GK F
Sbjct: 1 MGRKKTQMSLIQGESARQVSFSKRRTGIFKKASELCTLCAVEAAVVIFSPGGKAF 55
>29693.m002041 mads box protein, putative
Length = 239
Score = 61.2 bits (147), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 5 GRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDS 64
GR +I++K+IEN+ R +TFSKRR+G+ KKA E+ L AE+A +V+S GK F ++ S
Sbjct: 12 GRQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSFAHPS 71
>29613.m000367 mads box protein, putative
Length = 183
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYS 61
+GR +I +++I K QVTFSKRR GL KKA E+ LC E+A+IVFS GK F +
Sbjct: 6 LGRQKIAIEKISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKAFSFG 63
>30099.m001671 mads box protein, putative
Length = 226
Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEY 60
+GR +I +++I K QVTFSKRR GL KKA E+ LC E+A++VFS K F +
Sbjct: 26 LGRQKIAIEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSF 82
>29838.m001672 mads box protein, putative
Length = 207
Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 5 GRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDS 64
GR RI++ +I + +R VTFSKRR G+ KKA E+S LC AE+++IVFS + F + S
Sbjct: 8 GRQRIEMVKISKESNRLVTFSKRRYGVFKKASELSTLCGAEISIIVFSPGKRAFSFGNPS 67
>29739.m003627 mads box protein, putative
Length = 62
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 40/53 (75%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGK 56
MGR ++++ R+E+ +RQV +SKR+ G+LKK E++ LCD ++ LI+FS GK
Sbjct: 1 MGRRKLKILRLESVKARQVKYSKRKLGVLKKGKELATLCDVDLGLIMFSPSGK 53
>29912.m005524 mads box protein, putative
Length = 338
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTK 54
MGRG++ ++ I N+ SR +T+ KR+ GL KK E +LCD + +I+FS K
Sbjct: 1 MGRGKLNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFSPK 51
>30190.m010925 conserved hypothetical protein
Length = 386
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 4 MGRGRIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGK 56
MG RI+++ IE + +R +T+ KR+ L+KK E S+LC E LI+F+ K K
Sbjct: 1 MGHSRIKMELIEKESTRMLTYQKRKKSLVKKVSEFSILCGVEACLIIFAPKHK 53
>27893.m000228 mads box protein, putative
Length = 349
Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 11 LKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGK 56
+K++E++ R V+F+KRR GL KA E+ +LCDA++A++V S K
Sbjct: 9 MKKLESQKQRSVSFTKRRNGLFNKAAELFMLCDAQLAVLVASPCSK 54
>29653.m000299 mads box protein, putative
Length = 166
Score = 48.5 bits (114), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 8 RIQLKRI-ENKISRQVTFSKRRTGLLKKAHEISVL--CDAEVALIVFSTKGKLFEY---S 61
+I++K+I +NK VTFSKRRTGL KKA E L AEVALI FS G+ F + S
Sbjct: 29 KIEIKKIQDNKTGLIVTFSKRRTGLFKKAMEFCNLDGGGAEVALITFSPSGRPFSFGKPS 88
Query: 62 TDS---RYIFIYLLVFFFSP 78
DS RY+ V +P
Sbjct: 89 PDSVVLRYLTTPQRVKDTTP 108
>28180.m000391 mads box protein, putative
Length = 328
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 8 RIQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFS 52
++ +K+ E K R V+F+KRR GL KA E+ +LCDA++AL+V S
Sbjct: 6 KLPMKKRETKKQRSVSFTKRRYGLFNKAAELFMLCDAQLALLVSS 50