Jatropha Genome Database

JcCB0236281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0236281.10 + phase: 1 /pseudo/partial
         (392 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004516 chromatin assembly factor 1, subunit A, putative        286   1e-77

>29929.m004516 chromatin assembly factor 1, subunit A, putative
          Length = 823

 Score =  286 bits (732), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 167/317 (52%), Positives = 193/317 (60%), Gaps = 3/317 (0%)

Query: 75  LSALQNSETYQSCRTDLMRASGKLAKALKEAEIRSLVDGTLQKNGTVKADQEAKLEQKVL 134
           L+ALQ SE+ QS + DLM+AS KL+K L+EA+IR LVD  LQKNG   AD+EAK EQK+L
Sbjct: 187 LAALQKSESDQSHKFDLMKASEKLSKVLQEADIRLLVDTLLQKNGAELADKEAKREQKLL 246

Query: 135 IKQLXXXXXXXXXXXXXMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 194
           IKQL             MD                                         
Sbjct: 247 IKQLEKNKREVEKEKRRMDLELLKEKRQTEKEHKRLQEETEKDEKRREREESETRRQIRK 306

Query: 195 XXXXXXXXXXXXXXXXAKMKRQNAIKKQASIMERFLKRSKTDSPCQNEGTSIEETAPVLS 254
                           A++KR+NAIKKQASIMERFLKRSK++SPC N+ TS + T     
Sbjct: 307 QQEEAEKEQRRKEREEAELKRKNAIKKQASIMERFLKRSKSNSPCPNDETSTKATTSDSV 366

Query: 255 GKKSEKMPEAVTMAMDCTLSSNXXXXXXXXXKLHLSSWHHLGHAIRSNRKQHWSIRQKPK 314
            K+  K+PEAVT+AMD TLSSN         K HLSSW H+G +IRSNRKQHWSIRQKPK
Sbjct: 367 SKQRLKIPEAVTLAMDFTLSSNDDIGIDNIWKFHLSSWCHMGRSIRSNRKQHWSIRQKPK 426

Query: 315 TELFKELKLTTARELSHDGELIVEKLESEWGEQSSDDRLCATNLESSLNDKKWKRRKKLL 374
           TELFKELKLT  R+L+HD E  VEKL S W EQSSDDR C  NLESS  D +  +RK+LL
Sbjct: 427 TELFKELKLTGNRDLAHDDESSVEKLVSGW-EQSSDDRSCVMNLESS--DARKIQRKQLL 483

Query: 375 QFDKSHRPAFYGIWPKK 391
           QFDKSHRPAFYGIWPKK
Sbjct: 484 QFDKSHRPAFYGIWPKK 500