Jatropha Genome Database
- JcCB0235951.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0235951.10 - phase: 0 /partial
(186 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
28976.m000161 RNA binding protein, putative 114 4e-26
30048.m000319 Heterogeneous nuclear ribonucleoprotein 27C, putative 99 1e-21
30008.m000830 Heterogeneous nuclear ribonucleoprotein 27C, putative 99 1e-21
30170.m013671 DAZ-associated protein, putative 96 9e-21
29608.m000212 Heterogeneous nuclear ribonucleoprotein 27C, putative 96 1e-20
27613.m000635 Heterogeneous nuclear ribonucleoprotein 27C, putative 94 3e-20
29629.m001425 Heterogeneous nuclear ribonucleoprotein A1, putative 80 4e-16
29706.m001348 Heterogeneous nuclear ribonucleoprotein A1, putative 75 1e-14
29917.m002004 RNA binding protein, putative 74 5e-14
28462.m000127 glycine-rich RNA-binding protein, putative 68 2e-12
30078.m002323 ribonucleoprotein, chloroplast, putative 65 2e-11
30006.m000276 Heterogeneous nuclear ribonucleoprotein A1, putative 63 8e-11
30099.m001684 Heterogeneous nuclear ribonucleoprotein A1, putative 61 3e-10
30115.m001214 RNA-binding protein, putative 60 7e-10
29900.m001607 Heterogeneous nuclear ribonucleoprotein A1, putative 60 7e-10
29983.m003293 RNA binding protein, putative 59 1e-09
29923.m000811 RNA-binding region-containing protein, putative 59 2e-09
28582.m000318 conserved hypothetical protein 58 3e-09
30076.m004447 ribonucleoprotein, chloroplast, putative 57 7e-09
30170.m013735 RNA-binding region-containing protein, putative 55 1e-08
29908.m006046 RNA-binding region-containing protein, putative 55 2e-08
30076.m004440 RNA-binding region-containing protein, putative 54 4e-08
30094.m000674 dc50, putative 54 4e-08
30147.m013835 ribonucleoprotein, chloroplast, putative 54 4e-08
29637.m000760 Circumsporozoite protein precursor, putative 53 7e-08
30155.m001644 pentatricopeptide repeat-containing protein, putative 52 1e-07
29154.m000213 cold-inducible RNA binding protein, putative 52 2e-07
29633.m000882 glycine-rich RNA-binding protein, putative 52 2e-07
29428.m000321 poly-A binding protein, putative 51 3e-07
29629.m001443 glycine-rich RNA-binding protein, putative 51 4e-07
30032.m000469 RNA binding protein, putative 50 7e-07
29999.m000207 RNA binding protein, putative 50 9e-07
29801.m003218 nuclear acid binding protein, putative 50 9e-07
29948.m000699 glycine-rich RNA-binding protein, putative 49 1e-06
29751.m001798 FUS-interacting serine-arginine-rich protein 1 (TL... 49 1e-06
27964.m000365 nucleolar phosphoprotein, putative 49 2e-06
28629.m000549 nucleolar phosphoprotein, putative 49 2e-06
30146.m003481 polyadenylate-binding protein, putative 48 2e-06
30152.m002412 ribonucleoprotein, chloroplast, putative 48 3e-06
30147.m014250 zinc finger protein, putative 48 3e-06
30055.m001569 nucleolar phosphoprotein, putative 48 3e-06
28644.m000904 polyadenylate-binding protein, putative 47 4e-06
29739.m003726 nucleolysin tia-1, putative 47 5e-06
30183.m001303 spliceosome associated protein, putative 47 5e-06
30078.m002213 polyadenylate-binding protein, putative 47 7e-06
29878.m000232 RNA binding protein, putative 46 9e-06
>28976.m000161 RNA binding protein, putative
Length = 284
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 79/116 (68%), Gaps = 10/116 (8%)
Query: 1 VDVKPAIPKR--RSKQEQDN--------DEDSNSTEFRTKKIFVGGLPPNITKEELKNFF 50
VDVK A P+ + QEQ+ DE+ N E RTKKIFVGGLP +I+ EE K+FF
Sbjct: 75 VDVKWATPRNPCHNSQEQNTIDPIQSNGDENDNRIELRTKKIFVGGLPHDISNEEFKDFF 134
Query: 51 DSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKAK 106
+FGT+ DAVV++N +TG+ RGFGF++FDSE++ D +L+ +Y Q +EVK AK
Sbjct: 135 STFGTVRDAVVMYNGVTGRSRGFGFVTFDSEDSADTVLRNKYYQLKDCQIEVKMAK 190
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+FVGGL + L F +G + + +++ +K TG RGFGF++F+ D ++
Sbjct: 7 KLFVGGLNSKTDGDYLNLHFSKYGQVKETLIVMDKETGSSRGFGFVTFEDHSAADTAFRD 66
Query: 91 RY 92
++
Sbjct: 67 QH 68
>30048.m000319 Heterogeneous nuclear ribonucleoprotein 27C, putative
Length = 456
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEF---RTKKIFVGGLPPNITKEELKNFFDSFGTIT 57
V+ K A+P+ N S RTKKIFVGGL +T+ + K +FD FGTIT
Sbjct: 75 VEAKKAVPREDQNILNRNSSSSIHGSPSPARTKKIFVGGLASTVTESDFKKYFDQFGTIT 134
Query: 58 DAVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKA 105
D VV+++ T +PRGFGFI++DSEE VD +L + + + NG +VEVK+A
Sbjct: 135 DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLHKTFHELNGKMVEVKRA 182
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 26 EFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD 85
E K+F+GG+ + ++ L+ +F FG + +AV++ ++ TG+ RGFGF+ F +
Sbjct: 2 EMELGKLFIGGISWDTNEDRLREYFQVFGEVMEAVIMKDRATGRARGFGFVVFADPAVAE 61
Query: 86 IILQERYRQFNGYVVEVKKA 105
++ E++ +G VE KKA
Sbjct: 62 RVVMEKH-LIDGRNVEAKKA 80
>30008.m000830 Heterogeneous nuclear ribonucleoprotein 27C, putative
Length = 470
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 62/84 (73%)
Query: 27 FRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDI 86
RTKKIFVGGLPP +T +E + +F+++G +TD V+++++ T +PRGFGFISFD+E+ VD
Sbjct: 107 IRTKKIFVGGLPPALTDDEFRQYFEAYGLVTDVVIMYDQNTQRPRGFGFISFDNEDAVDR 166
Query: 87 ILQERYRQFNGYVVEVKKAKSTDM 110
+L + + NG VEVK+A D
Sbjct: 167 VLHKTFHDLNGKQVEVKRALPKDA 190
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GG+ T+++LK++F +G + VV+ +K TG+PRGFGF+ F +D +LQ+
Sbjct: 7 KLFIGGISWETTEDKLKDYFVQYGDVVQTVVMRDKTTGRPRGFGFVVFADPNILDRVLQD 66
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ +G VE KKA S +
Sbjct: 67 KH-TIDGRTVEAKKALSRE 84
>30170.m013671 DAZ-associated protein, putative
Length = 370
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 75/126 (59%), Gaps = 21/126 (16%)
Query: 1 VDVKPAIPK---------------------RRSKQEQDNDEDSNSTEFRTKKIFVGGLPP 39
V+VK AIPK + S+ + N + FRTKKIFVGGL
Sbjct: 75 VEVKKAIPKTEQLQFHRYQQQQQWQFPNQQKNSRLSESNGNGNGGDYFRTKKIFVGGLSS 134
Query: 40 NITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYV 99
++T+E+ K++F+SFG I D VV+ + T +PRGFGF++FDSE++VD +++ + + G
Sbjct: 135 SLTEEQFKDYFESFGKIVDVVVMQDSSTNRPRGFGFVTFDSEDSVDKAMEKTFHELMGKR 194
Query: 100 VEVKKA 105
VEVK+A
Sbjct: 195 VEVKRA 200
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
KIFVGG+ + +++ L+ F +GT++ ++V +K+T RGFGF+ F VD LQ+
Sbjct: 7 KIFVGGISRDTSEDALRVHFSKYGTVSGSLVAKDKITKNSRGFGFVWFSDSAFVDKALQD 66
Query: 91 RYRQFNGYVVEVKKA 105
+ G VEVKKA
Sbjct: 67 SHVIL-GRTVEVKKA 80
>29608.m000212 Heterogeneous nuclear ribonucleoprotein 27C, putative
Length = 484
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 71/110 (64%), Gaps = 7/110 (6%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEF-----RTKKIFVGGLPPNITKEELKNFFDSFGT 55
V+ K A+P R Q N +S RT+KIFVGGL +T+ + + +F+ +GT
Sbjct: 75 VEAKKAVP--RDDQNILNRSTGSSIHGSPGPGRTRKIFVGGLASTVTETDFRKYFEQYGT 132
Query: 56 ITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKA 105
ITD VV+++ T +PRGFGFI++DSEE VD +L + + + NG +VEVK+A
Sbjct: 133 ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLMKTFHELNGKMVEVKRA 182
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GG+ + +E LK +F SFG + +AV++ ++ TG+ RGFGF+ F + ++ E
Sbjct: 7 KLFIGGISWDTNEERLKEYFGSFGEVVEAVIMKDRTTGRARGFGFVVFADAAVAERVIME 66
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ +G +VE KKA D
Sbjct: 67 KH-NIDGRMVEAKKAVPRD 84
>27613.m000635 Heterogeneous nuclear ribonucleoprotein 27C, putative
Length = 478
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEF--RTKKIFVGGLPPNITKEELKNFFDSFGTITD 58
V+ K A+P+ N + + RTKKIFVGGL +T + K +F+ FG ITD
Sbjct: 75 VEAKKAVPRDDQHILNRNTSSIHGSPGPGRTKKIFVGGLASTVTDNDFKKYFEQFGNITD 134
Query: 59 AVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKA 105
VV+++ T +PRGFGFI++DSE+ VD +L + + + NG +VEVK+A
Sbjct: 135 VVVMYDHNTQRPRGFGFITYDSEDAVDRVLHKTFHELNGKMVEVKRA 181
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GG+ + +E LK +F +G + +AV++ ++ TG+ RGFGF+ F + ++ +
Sbjct: 7 KLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVIVD 66
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ +G VE KKA D
Sbjct: 67 KH-MIDGRTVEAKKAVPRD 84
>29629.m001425 Heterogeneous nuclear ribonucleoprotein A1, putative
Length = 348
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 11/107 (10%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAV 60
V++K IPK S +F+TKKIFVGG+P ++T++E K FF +G + +
Sbjct: 88 VEIKRTIPK----------GSGQSKDFKTKKIFVGGIPSSVTEDEFKGFFSKYGQVVEHQ 137
Query: 61 VIHNKLTGKPRGFGFISFDSEETVDIILQE-RYRQFNGYVVEVKKAK 106
+I + T + RGFGFI FDSEETVD +L G VE+KKA+
Sbjct: 138 IIRDHETNRSRGFGFIIFDSEETVDEMLSNGNMIDMAGTQVEIKKAE 184
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 12 SKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPR 71
SK + DN + KIF+GGL + T F +G ITD+V++ ++ TG+PR
Sbjct: 3 SKSKSDNPHSGDGAS--PGKIFIGGLAKDTTYATFNKHFGRYGEITDSVIMKDRYTGQPR 60
Query: 72 GFGFISFDSEETVDIILQERYRQFNGYVVEVKK 104
GFGFI++ VD ++++ + +G VE+K+
Sbjct: 61 GFGFITYADPSVVDKVIEDTH-VIHGKQVEIKR 92
>29706.m001348 Heterogeneous nuclear ribonucleoprotein A1, putative
Length = 412
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 10/106 (9%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAV 60
V+VK +P+ +E R +KIFVGG+PP +T++EL +F +G I +
Sbjct: 148 VEVKRTVPR---------EEMEVKGVVRARKIFVGGIPPTLTEDELGEYFSVYGNIVEHQ 198
Query: 61 VIHNKLTGKPRGFGFISFDSEETVDIILQE-RYRQFNGYVVEVKKA 105
++ + TG+ RGFGF++F++E++V+ I R + G VE+KKA
Sbjct: 199 IMLDHKTGRSRGFGFVTFETEDSVEQIFSTGRTHELGGKRVEIKKA 244
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 10 RRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGK 69
RR + D++S++ K+FVGG+ T+E ++F FG ITD+V++ ++ +G+
Sbjct: 59 RRQSLTFNQTRDNSSSDSSQGKLFVGGISWETTEETFTSYFSKFGEITDSVIMRDRHSGR 118
Query: 70 PRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKAKSTDMM 111
PRGFGF++F D +L+E + + VEVK+ + M
Sbjct: 119 PRGFGFVTFADLAAADRVLEEDH-IIDDRAVEVKRTVPREEM 159
>29917.m002004 RNA binding protein, putative
Length = 2256
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 11/107 (10%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAV 60
V++K IPK + +F+TKKIFVGG+P +T+ E K FF +G + +
Sbjct: 1996 VEIKRTIPKGAI----------GARDFKTKKIFVGGIPTTVTEVEFKEFFMQYGEVIEHQ 2045
Query: 61 VIHNKLTGKPRGFGFISFDSEETVDIILQERYR-QFNGYVVEVKKAK 106
++ + T + RGFGFI+FD+E+ VD +L + + + G VE+KKA+
Sbjct: 2046 IMRDHSTNRSRGFGFITFDTEQAVDDLLAKGNKLELAGGQVEIKKAE 2092
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 26 EFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD 85
E R +KIF+GGL T + F +G ITD+V++ ++ TG+PRGFGF+++ VD
Sbjct: 1923 EARRRKIFIGGLARETTTAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVD 1982
Query: 86 IILQERYRQFNGYVVEVKKAKSTDMMGKND 115
++Q+ + NG VE+K+ +G D
Sbjct: 1983 QVIQDSH-VINGKQVEIKRTIPKGAIGARD 2011
>28462.m000127 glycine-rich RNA-binding protein, putative
Length = 276
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
+IFVGGL ++T+ +L+N F+ +G I + V+ + TG+PRGFGFI+F ++D ++E
Sbjct: 8 RIFVGGLSWDVTERQLENAFNRYGKIVECQVMLERDTGRPRGFGFITFSDRRSMDDAIRE 67
Query: 91 RY-RQFNGYVVEVKKAK 106
+ R+F V+ V KA+
Sbjct: 68 MHGREFGDRVISVNKAQ 84
>30078.m002323 ribonucleoprotein, chloroplast, putative
Length = 280
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 14 QEQDNDEDSNSTEF-RTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRG 72
QE+D D + + F + K+FVG LP N+ +L F+S G + VI++K+TG+ RG
Sbjct: 75 QEEDVSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRG 134
Query: 73 FGFISFDSEETVDIILQERYRQFNGYVVEVKKAK 106
FGF++ S + V+ Q QFNGY +E + +
Sbjct: 135 FGFVTMSSIDEVEAAAQ----QFNGYELEGRALR 164
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 37/55 (67%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD 85
+++VG L ++ L++FF G + DA V++++ +G+ RGFGF+++ S E V+
Sbjct: 197 RLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVE 251
>30006.m000276 Heterogeneous nuclear ribonucleoprotein A1, putative
Length = 462
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 25 TEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
+++ +KI+V + ++ +EL NFF FG I + + +KLTGKP+GF + S E+
Sbjct: 231 SDYTRRKIYVSNVAADLDPKELTNFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSAESA 290
Query: 85 DIILQERYRQFNGYVVEVKKAKSTDMMGK 113
L+E ++ F G+++ +KA GK
Sbjct: 291 KRALEEPHKSFEGHMLHCQKAIDGPKHGK 319
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 30 KKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQ 89
+KIFV GL + + E L N F +G I D + +K++GK +G+GFI F LQ
Sbjct: 129 RKIFVHGLGWDTSAETLTNAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKKRSGARKALQ 188
Query: 90 ERYRQFNGYVVEVKKA 105
E ++ + + A
Sbjct: 189 EPQKKIGNRMTACQLA 204
>30099.m001684 Heterogeneous nuclear ribonucleoprotein A1, putative
Length = 478
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%)
Query: 25 TEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
+E+ +KI++ + ++ ++L +FF FG I + + +KLTGKP+GF + S E+
Sbjct: 233 SEYTQRKIYISNVGADLDPQQLTSFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSVESA 292
Query: 85 DIILQERYRQFNGYVVEVKKAKSTDMMGKN 114
L+E ++ F G+++ +KA GK+
Sbjct: 293 KKALEEPHKNFEGHILHCQKAVDGPKHGKS 322
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 30 KKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQ 89
+KIFV GL + T E L N F +G I D + +K++GK +G+GFI F L+
Sbjct: 135 RKIFVHGLGWDSTAETLTNAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKKRSGARKALE 194
Query: 90 ERYRQFNGYVVEVKKA 105
E ++ + + A
Sbjct: 195 EPQKKIGNRMTACQLA 210
>30115.m001214 RNA-binding protein, putative
Length = 359
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 30 KKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQ 89
KKIFVG LP T E+L+ +F FG I D V + RGFGF++F +EE V +
Sbjct: 224 KKIFVGRLPQEATPEDLRQYFGRFGHILDVYVPKDPKRTGHRGFGFVTF-AEEGVADRVS 282
Query: 90 ERYRQFNGYVVEVKKAKSTDMMGKNDNYINN 120
R + G+ V + A D G + N++ N
Sbjct: 283 RRSHEICGHQVAIDSATPIDDAGPSGNFMMN 313
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAV 60
++VK A PK+ E+ + + +IFV +PP++T+ ++ F+ +G I D
Sbjct: 72 LEVKVATPKQ---------EEMRAPAKKVTRIFVARIPPSVTETTFRSHFEKYGEIIDLY 122
Query: 61 VIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKA 105
+ + + RG GFI+F S ++VD ++ + + + G V V +A
Sbjct: 123 MPKDHSSKAHRGIGFITFASADSVDSLMADTH-ELGGSTVVVDRA 166
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 30 KKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQ 89
+K+ V G+P + E L+ + FG + D +V+ + +G+ RGFG+++F S E L
Sbjct: 3 RKLVVLGIPWEVDTEGLREYMTKFGELDDCIVMKERSSGRSRGFGYVTFASAEDAKSALS 62
Query: 90 ERYRQFNGYVVEVKKA 105
+ N ++EVK A
Sbjct: 63 SEHFLGN-RMLEVKVA 77
>29900.m001607 Heterogeneous nuclear ribonucleoprotein A1, putative
Length = 398
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%)
Query: 25 TEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
++ +K+F+ GL T E ++N F+++G + +A+VI +K TGK +GFGFI+F +
Sbjct: 70 SDISLRKLFIRGLSSETTTETIRNLFNNYGELEEAIVIFDKNTGKSKGFGFITFKHVDGA 129
Query: 85 DIILQERYRQFNGYVVEVKKAKS 107
I L+E ++ +G + + A +
Sbjct: 130 LIALKEPSKKIDGRMTVTQLASA 152
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 26 EFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD 85
+ +KI+VG +P NI E L FF ++G + + + +K TGK +GF FI + +EE
Sbjct: 167 DVSARKIYVGNVPYNIPSERLLGFFLNYGEVEEGPLGFDKSTGKSKGFAFIIYKTEEGAK 226
Query: 86 IILQERYRQFNGYVVEVKKA 105
+ + + +G+ V K A
Sbjct: 227 AAIADPVKMIDGHQVVCKMA 246
>29983.m003293 RNA binding protein, putative
Length = 267
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV------ 84
K+FVGGL KE LKN+F FG I +AVVI +K TG+ +G+GF++F E
Sbjct: 20 KVFVGGLAWETHKETLKNYFQQFGEILEAVVIFDKNTGRSKGYGFVTFKEAEAARRACVD 79
Query: 85 -DIILQERYRQFNGYVVEVKKAK-STDMMGKNDNY 117
++ R N + V+++K ST G + N+
Sbjct: 80 SSPVIDGRRANCNLASLGVQRSKPSTPQHGGSRNF 114
>29923.m000811 RNA-binding region-containing protein, putative
Length = 256
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+FVGGL KE ++ F+ +G I +AV+I +KLTG+ +G+GF++F E ++
Sbjct: 17 KVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 76
Query: 91 RYRQFNG 97
NG
Sbjct: 77 ATPMING 83
>28582.m000318 conserved hypothetical protein
Length = 534
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 22 SNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSE 81
S + + +K+++GGL P IT E L NFF G I + V ++K T + RGFGF+++ +
Sbjct: 349 STTPDLAQRKLYIGGLSPEITSEMLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTV 408
Query: 82 ETVDIILQERYRQFNGYVVEVKKA 105
E + + + G + VK A
Sbjct: 409 EAAKKAIDDPQKVLGGRSIIVKLA 432
>30076.m004447 ribonucleoprotein, chloroplast, putative
Length = 281
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K++VG L + EEL++ F FGT+ A V++++ GK R +GF+SF S + D L
Sbjct: 202 KVYVGNLAWTVKPEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAALSF 261
Query: 91 RYRQFNGYVVEVKK 104
+ F G ++ V+K
Sbjct: 262 NGKDFRGRILVVRK 275
>30170.m013735 RNA-binding region-containing protein, putative
Length = 259
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
K+FVGGL K+ +K +F+ FG I +AVVI +K TG+ +G+GF++F E
Sbjct: 17 KVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFRDPEAA 70
>29908.m006046 RNA-binding region-containing protein, putative
Length = 261
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
K+FVGGL EE++ +F+ FG I +AV+I +K TGK +G+GF++F E+
Sbjct: 14 KVFVGGLAWESPTEEMRKYFEQFGEILEAVIISDKNTGKSKGYGFVTFRDPESA 67
>30076.m004440 RNA-binding region-containing protein, putative
Length = 291
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 23 NSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEE 82
N T F KIFVGGL ++ ++ +F+ FG I +AVVI +K TG+ +G+GF++F E
Sbjct: 19 NDTTF--TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPE 76
Query: 83 TVDIILQ 89
Q
Sbjct: 77 AAIRACQ 83
>30094.m000674 dc50, putative
Length = 210
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
+ F+GGL + + LK F+ FG + +A V+ +K +G+ RGFGF++FD ++ ++ ++E
Sbjct: 8 RCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEE 67
Query: 91 -RYRQFNGYVVEVKKAKSTDMMGK 113
+G + V KA+ G+
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGSGR 91
>30147.m013835 ribonucleoprotein, chloroplast, putative
Length = 319
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
KIFVG LP ++ ++L F+ GT+ A VI+N+ T RGFGF+S + E + ++
Sbjct: 142 KIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVEM 201
Query: 91 RYRQ-FNGYVVEVKKA 105
+R +G ++ V KA
Sbjct: 202 FHRHDLDGRLLTVNKA 217
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSE-ETVDIILQ 89
+I+VG LP ++ L+ F G + DA V++++ TG+ RGFGF++ +E E D I
Sbjct: 236 RIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAA 295
Query: 90 ERYRQFNGYVVEVKKAK 106
R +G + V A+
Sbjct: 296 LDGRSLDGRAIRVNVAE 312
>29637.m000760 Circumsporozoite protein precursor, putative
Length = 281
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 62 IHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKAKSTD 109
+ ++ T +PRGFGFI+FD+E+ VD +L + + + NG +VEVK+A D
Sbjct: 1 MFDQQTQRPRGFGFITFDAEDAVDRVLHKVFHELNGKLVEVKRALPKD 48
>30155.m001644 pentatricopeptide repeat-containing protein, putative
Length = 924
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 9 KRRSKQEQDNDEDSNSTEFRTK-KIFVGGLPPNITKEELKNFFDSFGTITDAVVI--HNK 65
+ +++ ++ + +S+ EFR + KIF+G LP I K E+ FF FG I ++I +N+
Sbjct: 140 RAKTQVDKHQENESHKPEFRQEGKIFIGNLPNWIKKHEISEFFRQFGPIKKVILIKGYNE 199
Query: 66 LTGKPRGFGFISFD---SEETVDIILQERYRQFNGYVVEVKKAKSTDMMGKND 115
T + GFGF+ +D +E++ ++ +F+G ++ VK + K D
Sbjct: 200 -TERNAGFGFVIYDDKTAEKSATKAVEFDGMEFHGRILTVKLDDGRRLKAKAD 251
>29154.m000213 cold-inducible RNA binding protein, putative
Length = 94
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
++FVG L T ++L+ F FG + +A ++ + T KP+GFGF++FDSE Q+
Sbjct: 8 QLFVGRLSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQA----QK 63
Query: 91 RYRQFNGYVVE 101
+ NG +V+
Sbjct: 64 ALKAMNGRIVD 74
>29633.m000882 glycine-rich RNA-binding protein, putative
Length = 166
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV-DIILQ 89
+ FVGGL + + L+ F ++G + ++ +I+++ TG+ RGFGF++F++E+++ D I
Sbjct: 9 RCFVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEKSMRDAIEG 68
Query: 90 ERYRQFNGYVVEVKKAKS 107
+ +G + V +A+S
Sbjct: 69 MNGQNLDGRNITVNEAQS 86
>29428.m000321 poly-A binding protein, putative
Length = 216
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 11 RSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKP 70
R EQ + SN+T +++G +P ++E++ +F FGTI + NK TGK
Sbjct: 41 RKLAEQKEVKKSNATV-----LYIGRIPHGFYEKEMQAYFSQFGTIKKLRIARNKKTGKS 95
Query: 71 RGFGFISFDSEETVDII 87
+ +GFI F+ E +++
Sbjct: 96 KHYGFIEFEDPEVAEVV 112
>29629.m001443 glycine-rich RNA-binding protein, putative
Length = 134
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 29 TKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIIL 88
+ K+F+GGL + LK+ F FG + A VI ++ TG+ RGFGF+ F S ++ L
Sbjct: 35 SSKLFIGGLSYGTNDDSLKDAFSGFGDVVTARVITDRDTGRSRGFGFVDFSSVDSASSAL 94
Query: 89 Q 89
Sbjct: 95 S 95
>30032.m000469 RNA binding protein, putative
Length = 127
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+FVGGL T + L F +G + +A ++ +++ + +GFGF++F SE+ L E
Sbjct: 32 KLFVGGLSFYTTDKGLTEAFSQYGQVVEATIVSDRVLDRSKGFGFVTFASEDEAHNALSE 91
Query: 91 RY-RQFNGYVVEVKKAK 106
+ NG V+ V AK
Sbjct: 92 MNGKTLNGRVIYVDYAK 108
>29999.m000207 RNA binding protein, putative
Length = 144
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
++FV GL T E+LK F FG + DA VI ++ +G+ +GFGFI++ + E + +
Sbjct: 37 RLFVSGLSRLTTDEKLKEAFSPFGQLVDAKVIIDRASGRSKGFGFITYATIEEAEKAREG 96
Query: 91 RYRQF-NGYVVEVKKAK 106
+F +G+V+ V AK
Sbjct: 97 MNAKFLDGWVIFVDPAK 113
>29801.m003218 nuclear acid binding protein, putative
Length = 438
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 29 TKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIIL 88
+K I+VG L + + L + F G +T VI NK TG+P G+GFI F S T + +L
Sbjct: 105 SKTIWVGDLLHWMDETYLHSCFSHTGEVTSVKVIRNKQTGQPEGYGFIEFYSHATAEKVL 164
Query: 89 Q 89
Q
Sbjct: 165 Q 165
>29948.m000699 glycine-rich RNA-binding protein, putative
Length = 126
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 37/51 (72%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSE 81
K+FV GL ++ ++ LK+ F SFG +++ ++++K +G+ RGFGF++F E
Sbjct: 26 KLFVAGLSWSVDEKSLKDAFSSFGEVSEVRIMYDKDSGRSRGFGFVNFSKE 76
>29751.m001798 FUS-interacting serine-arginine-rich protein 1
(TLS-associated protein with Ser-Arg repeats)
(TLS-associated protein with SR repeats) (TASR)
(TLS-associated serine-arginine protein) (TLS-associated
SR protein), putative
Length = 399
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 32 IFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQER 91
++V GL P ITK +L+ F S G + D ++ + T + RGFGF++ + D ++
Sbjct: 49 LYVTGLSPRITKRDLEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMSTLVEADRCIKYL 108
Query: 92 YRQ-FNGYVVEVKKAK 106
R G V+ V+KAK
Sbjct: 109 NRSVLEGRVITVEKAK 124
>27964.m000365 nucleolar phosphoprotein, putative
Length = 557
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
++F+GGLP + +++L++ + G I + ++ +K TG+ +GF F++F S+E ++E
Sbjct: 110 EVFIGGLPKDALEDDLRDLCEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKAIEE 169
Query: 91 RY-RQFNGYVVEVKKAKSTDMM 111
+ ++F G + +++ + +
Sbjct: 170 IHSKEFKGKTLRCSLSETKNRL 191
>28629.m000549 nucleolar phosphoprotein, putative
Length = 481
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 9 KRRSKQEQDNDEDSNSTEF-----RTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIH 63
++ S E+ DE+ E ++++GG+P + ++++L++F +S G +T+ ++
Sbjct: 84 QKGSDSEEGQDEERKHAELLALPPHGSEVYLGGIPIDASEQDLRHFCESIGEVTEVRIMK 143
Query: 64 NKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKAKSTDMMGKNDNYINNM 121
K + +G+ F++F S+E ++ Q N + +K K + + ++ N+
Sbjct: 144 GKASSDTKGYAFVTFRSKELASKAIE----QLNNTEFKGRKIKCSTSQANHRLFLGNV 197
>30146.m003481 polyadenylate-binding protein, putative
Length = 608
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 26 EFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD 85
E + ++V L ++T++ N F +FG I AV++ + GK RGFGF+ F+S E
Sbjct: 195 ELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDH-NGKSRGFGFVDFESPEDA- 252
Query: 86 IILQERYRQFNGYVVEVK 103
++ NGY +E +
Sbjct: 253 ---KKAVDALNGYQLESR 267
>30152.m002412 ribonucleoprotein, chloroplast, putative
Length = 256
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K++VG L +T E LKNFF G + A V T K G+GF+SF EE V+ +
Sbjct: 181 KVYVGNLAKTVTSEILKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAAIS- 239
Query: 91 RYRQFNGYVVEVKKAK 106
FN ++E +K +
Sbjct: 240 ---SFNNSLLEGQKIR 252
>30147.m014250 zinc finger protein, putative
Length = 798
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 26 EFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISF-DSEETV 84
E+ +++G LPPN+ + L F +FG I A VI +++TG +G+GF+ + D +
Sbjct: 493 EYDDTNLYIGYLPPNLDDDGLIGLFSAFGDIVMAKVIKDRVTGVSKGYGFVKYRDIQMAN 552
Query: 85 DIILQERYRQFNGYVVEVKKA 105
+ I + +G + V+ A
Sbjct: 553 NAIASMNGYRIDGRTIAVRVA 573
>30055.m001569 nucleolar phosphoprotein, putative
Length = 489
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 23 NSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEE 82
+S + K I+V LP N+T+++LK F+ G IT V+ K + GF+ F
Sbjct: 279 SSASSQVKAIYVKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFVHFAERS 338
Query: 83 TVDIILQ--ERYRQFNGYVVEVKKAK 106
+ L+ ERY + +G VVE AK
Sbjct: 339 SAMKALKNTERY-ELDGQVVECSLAK 363
>28644.m000904 polyadenylate-binding protein, putative
Length = 657
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 14 QEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGF 73
++Q+ + S +F ++V L IT E+L+ F +GTIT A+V+ ++ TGK RGF
Sbjct: 210 RQQERTRTNGSPKF--TNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQ-TGKSRGF 266
Query: 74 GFISFDSEETVDIILQERYRQFNGYVVEVKKA 105
GF++F ++ ++ + NG KA
Sbjct: 267 GFVNFQDPDSAAAAVE----KLNGTTAHDDKA 294
>29739.m003726 nucleolysin tia-1, putative
Length = 358
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 32 IFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
IFVG L P +T L F F + +DA V+ ++ TG+ RGFGF+SF +++ + E
Sbjct: 131 IFVGDLSPEVTDATLYASFALFPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAINE 189
>30183.m001303 spliceosome associated protein, putative
Length = 376
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 32 IFVGGLPPNITKEELKNFFDSFGTI-TDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
+F+G L P++ ++ L + F +FG I T+ ++ + TG RGFGFIS+DS + D ++
Sbjct: 114 LFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFDASDAAIEA 173
Query: 91 RYRQF 95
Q+
Sbjct: 174 MNGQY 178
>30078.m002213 polyadenylate-binding protein, putative
Length = 632
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 9 KRRSKQEQ------DNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVI 62
++R+++EQ + T+F+ ++V + ++T EEL+ F GTIT A ++
Sbjct: 268 QKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEELREHFSQCGTITSAKLM 327
Query: 63 HNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVK 103
+ G+ +GFGF+ F S E + F+GY+ K
Sbjct: 328 KDD-KGRSKGFGFVCFSSSEEASKAVN----TFHGYMFHRK 363
>29878.m000232 RNA binding protein, putative
Length = 354
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 32 IFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQER 91
+FV GL T E LK F FG + A V+ ++++G +GFGF+ + S E + ++
Sbjct: 54 LFVSGLSKRTTTEGLKQAFSKFGEVVQARVVTDRVSGYSKGFGFVRYGSLEDAEKGIEGM 113
Query: 92 YRQF-NGYVVEVKKAK 106
+F +G+V+ + A+
Sbjct: 114 DGKFLDGWVIFAEYAR 129