Jatropha Genome Database

JcCB0235721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0235721.10 - phase: 0 /partial
         (530 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29727.m000488 DNA binding protein, putative                           219   2e-57

>29727.m000488 DNA binding protein, putative
          Length = 1374

 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 122/194 (62%), Positives = 136/194 (70%), Gaps = 5/194 (2%)

Query: 1    HFADLLAAQFCSLMIREGYLVEDNIQPKPTQMNIASTSQPIAVGIPPNNSAAEVQK-YNE 59
            HFADLLAAQFCSLMIREGYLVEDNIQPKPT+MN++S+SQP A GI PNNSAAEVQ+ YNE
Sbjct: 820  HFADLLAAQFCSLMIREGYLVEDNIQPKPTRMNVSSSSQPNAAGIAPNNSAAEVQQQYNE 879

Query: 60   AVSAQAPNDIKPSLSGNASINPSQNLLANARMLPPGNPKALPMSQGLVSAVSMAARXXXX 119
            AVS QA N++KP+ SGNA +NPSQNLLA+ARMLPPGNP+ALPMSQGL+SAVSM AR    
Sbjct: 880  AVSGQASNEVKPNFSGNAPMNPSQNLLASARMLPPGNPQALPMSQGLLSAVSMPAR--PQ 937

Query: 120  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAMMLPSNSLSHLNALGQN 179
                                                    R  M+LP  SLSHLN LGQN
Sbjct: 938  LDPQPQLQQQPQQPPQMQQQQPPQQQQNQHSLIQQQSQFQRPPMVLP--SLSHLNTLGQN 995

Query: 180  SNMQLGNHMVNKPS 193
            SNMQLG+HMVNKPS
Sbjct: 996  SNMQLGSHMVNKPS 1009



 Score =  155 bits (392), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 94/111 (84%), Gaps = 4/111 (3%)

Query: 266  NNVGQNSMNLGQASSITNVISQQIRAGQMSQAQAAFLTSKLRM---RPSILGPSQSGIAG 322
            NNVGQN +NL Q +++ NVISQ  RAGQ++  QAA+L SKLRM   R S+LG  QSGIAG
Sbjct: 1104 NNVGQNQINLSQTTNLPNVISQHFRAGQVTPQQAAYL-SKLRMAQNRTSMLGAPQSGIAG 1162

Query: 323  MSGARQIQPGSASLSMLGQSLNRANMNPMQRSAIGPMGPPKLMAGVNLYVN 373
            MSGARQ+ PGSA LSMLGQSLNRANMNPMQRSA+GPMGPPKLMAG+NLY+N
Sbjct: 1163 MSGARQMHPGSAGLSMLGQSLNRANMNPMQRSAMGPMGPPKLMAGMNLYMN 1213



 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/104 (67%), Positives = 72/104 (69%), Gaps = 2/104 (1%)

Query: 426  DPSSSLQAVVSPPQVGSPSTMVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSGAIHA 485
            DPSSSLQAVVS  QVGSPSTM I                             +SSGAIHA
Sbjct: 1272 DPSSSLQAVVSSSQVGSPSTMGIPQLNQQQQPQQQPSPQQMSQRTPMSPQ--ISSGAIHA 1329

Query: 486  MSAGNPEACPASPQLSSQTLGSVGSITNSPMELQGVNKSNSVSN 529
            MSAGNPEACPASPQLSSQTLGSVGSITNSPMELQGVNKSNSV+N
Sbjct: 1330 MSAGNPEACPASPQLSSQTLGSVGSITNSPMELQGVNKSNSVNN 1373