Jatropha Genome Database

JcCB0234781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234781.10 + phase: 0 
         (154 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29633.m000903 ATP synthase mitochondrial F1 complex assembly fac...   116   5e-27

>29633.m000903 ATP synthase mitochondrial F1 complex assembly factor
           2, mitochondrial precursor, putative
          Length = 334

 Score =  116 bits (290), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 86/149 (57%), Gaps = 3/149 (2%)

Query: 1   MATSLINRTXXXXXXXXXXXXXXXXXTRHFTSIATAXXXXXXXXXXXXXXXGN-ATATTD 59
           MATSLI +T                 T HFT+ ATA                + AT+T +
Sbjct: 1   MATSLITKTLNSIKNPRLLSPLSSSVTHHFTTAATAATAAQSDGPSSPFTFTDTATSTNN 60

Query: 60  SIFLKAPNSNAKLDAAP--SSSVTMPMSFMTGSIVGKRFYKQVTTREADDGNGWTVMLDY 117
           SI +K PN +A+ +A    SSSVTMPMSFMTGSIVGKRFYK+VTTREADDG G+TVMLDY
Sbjct: 61  SIHMKTPNPDARGEATSFSSSSVTMPMSFMTGSIVGKRFYKKVTTREADDGIGYTVMLDY 120

Query: 118 RTLKTPSKRXXXXXXXXXXXXXXXEWEYQ 146
           RTLKTPSK+               EW+ Q
Sbjct: 121 RTLKTPSKKPLKLPTLSLAKAIAAEWDCQ 149