Jatropha Genome Database

JcCB0234681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234681.10 + phase: 0 /partial
         (152 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30221.m002218 mads box protein, putative                              245   5e-66

>30221.m002218 mads box protein, putative
          Length = 233

 Score =  245 bits (626), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 122/170 (71%), Positives = 130/170 (76%), Gaps = 20/170 (11%)

Query: 2   RMQQIIERYQKVKGTSIPEHDSR--------------------MKRYMGEDMSSIPFXXX 41
           RM+QIIERYQK+ GT IPEHDSR                    M+RY GEDMSSIPF   
Sbjct: 63  RMEQIIERYQKITGTCIPEHDSREQLFGELAMLRKETRRLQLNMRRYTGEDMSSIPFEEL 122

Query: 42  XXXXXXXXRSVAKVRNRKNELLQQQLDNLHRKERMLEEENGNMYRWIQDHRVAMEYQHAT 101
                   RSVAKVR+RKNELLQQQLDNL RKERMLEEENGNMYRWIQ+HR A+EYQ AT
Sbjct: 123 GELEQELERSVAKVRDRKNELLQQQLDNLRRKERMLEEENGNMYRWIQEHRAALEYQQAT 182

Query: 102 LEAKPVEHQQVLDQFPFCGEPSSVLQLGTIHSQIHSYHLQLAQPNLQGSS 151
           +EAKPVEHQQVLDQFPFCGEP+SVLQL TI SQIH YHLQLAQPNLQGSS
Sbjct: 183 MEAKPVEHQQVLDQFPFCGEPNSVLQLATIPSQIHPYHLQLAQPNLQGSS 232